STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traEPutative plasmid transfer protein; Similar to Salmonella typhi hypothetical protein sty4554 or t4254 SWALL:Q8Z1K8 (EMBL:AL627282) (291 aa) fasta scores: E(): 1.3e-28, 36.89% id in 290 aa, and to Salmonella typhimurium TraE protein traE SWALL:Q9R2H6 (EMBL:AB027308) (274 aa) fasta scores: E(): 0.00014, 23.13% id in 268 aa. (266 aa)    
Predicted Functional Partners:
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
       0.480
ECA0584
Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa.
     
 0.480
ECA1511
Putative exported protein; Similar to Yersinia pestis 102 kbases unstable region: from 1 to 119443 ypo1942 SWALL:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 2.4e-63, 86.78% id in 174 aa, and to Pasteurella multocida hypothetical protein Pm0452 SWALL:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 1.1e-57, 79.06% id in 172 aa.
      
 0.477
ECA0585
Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa.
     
 0.476
ECA0583
Putative plasmid-related protein; Similar to Morganella morganii PemI pemI SWALL:O52204 (EMBL:AF027767) (97 aa) fasta scores: E(): 1.7, 27.55% id in 98 aa, and to Agrobacterium tumefaciens pemi protein pemi or atu0939 or agr_c_1711 SWALL:Q8UGU6 (EMBL:AE009059) (103 aa) fasta scores: E(): 0.1, 28.73% id in 87 aa.
      
 0.475
pilV
Putative Type IV pilus prepilin protein; Similar to Escherichia coli PilV protein PilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 8.8e-12, 32.47% id in 428 aa, and to Salmonella typhi PilV or sty4550 or t4250 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 7.5e-13, 26.49% id in 453 aa.
      
 0.474
cfa8B
Putative oxidoreductase; Similar to the C-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 6.5e-122, 74.05% id in 397 aa, and to Streptomyces lavendulae hypothetical 45.2 kDa protein SWALL:Q9X5P6 (EMBL:AF127374) (414 aa) fasta scores: E(): 2.2e-82, 52.39% id in 397 aa.
      
 0.474
cfa1
Similar to Pseudomonas syringae cfa-acyl carrier protein Cfa1 SWALL:P72237 (EMBL:U56980) (83 aa) fasta scores: E(): 6.8e-17, 60% id in 80 aa.
      
 0.474
ECA0582
Putative plasmid-related protein; Similar to Escherichia coli PemK protein pemK SWALL:PEMK_ECOLI (SWALL:P13976) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa, and to Plasmid R100 plasmid stable inheritance protein pemK SWALL:BAA78898 (EMBL:AP000342) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa.
      
 0.473
ECA0587
Conserved hypothetical protein; Similar to Yersinia pestis putative DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium putative integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa.
      
 0.473
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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