STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0551Putative membrane protein; Similar to Oceanobacillus iheyensis hypothetical protein ob2071 SWALL:BAC14027 (EMBL:AP004599) (161 aa) fasta scores: E(): 1.4, 27.83% id in 97 aa. (99 aa)    
Predicted Functional Partners:
ECA0552
Similar to Salmonella typhi hypothetical protein sty1595 SWALL:Q8Z6W9 (EMBL:AL627270) (227 aa) fasta scores: E(): 1.4e-26, 38.49% id in 226 aa.
       0.648
ECA0550
Similar to Proteus vulgaris hypothetical protein orf267 SWALL:Q8KJV9 (EMBL:AP004237) (138 aa) fasta scores: E(): 6.8e-24, 57.46% id in 134 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:Q8GHW2 (EMBL:AB088420) (169 aa) fasta scores: E(): 3.9e-05, 39.17% id in 97 aa.
       0.578
ECA0553
Putative exported protein; No significant database matches.
       0.451
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
       0.442
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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