STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0554Similar to Salmonella typhi putative membrane protein sty4557 SWALL:Q8Z1K7 (EMBL:AL627282) (304 aa) fasta scores: E(): 5e-13, 38.41% id in 315 aa. (291 aa)    
Predicted Functional Partners:
ECA0555
Similar to Salmonella typhi putative exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa.
       0.801
ECA0556
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4559 sty4559 or t4257 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 3.2e-31, 50.28% id in 173 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:Q8GQ43 (EMBL:AF440523) (196 aa) fasta scores: E(): 1.9e-21, 41.56% id in 166 aa.
       0.801
ECA0557
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.
       0.801
ECA0561
Putative membrane protein; Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi putative membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa.
       0.801
ECA0560
Putative plasmid transfer protein; Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa.
       0.783
ECA0558
Similar to Salmonella typhi putative membrane protein sty4561 SWALL:Q8Z1K3 (EMBL:AL627282) (189 aa) fasta scores: E(): 4.7e-36, 55.24% id in 181 aa.
       0.766
ECA0559
Putative membrane protein; No significant database matches.
       0.762
ECA0562
Hypothetical protein; No significant database matches.
       0.691
ECA0553
Putative exported protein; No significant database matches.
       0.522
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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