STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0558Similar to Salmonella typhi putative membrane protein sty4561 SWALL:Q8Z1K3 (EMBL:AL627282) (189 aa) fasta scores: E(): 4.7e-36, 55.24% id in 181 aa. (205 aa)    
Predicted Functional Partners:
ECA0555
Similar to Salmonella typhi putative exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa.
       0.801
ECA0556
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4559 sty4559 or t4257 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 3.2e-31, 50.28% id in 173 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:Q8GQ43 (EMBL:AF440523) (196 aa) fasta scores: E(): 1.9e-21, 41.56% id in 166 aa.
       0.801
ECA0557
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.
       0.801
ECA0561
Putative membrane protein; Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi putative membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa.
       0.796
ECA0560
Putative plasmid transfer protein; Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa.
       0.790
ECA0559
Putative membrane protein; No significant database matches.
       0.773
ECA0554
Similar to Salmonella typhi putative membrane protein sty4557 SWALL:Q8Z1K7 (EMBL:AL627282) (304 aa) fasta scores: E(): 5e-13, 38.41% id in 315 aa.
       0.767
ECA0562
Hypothetical protein; No significant database matches.
       0.701
ECA0914
Putative component of polysulfide reductase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor nrfc or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 7.3e-49, 58.66% id in 225 aa. Also similar to ECA1877 (56.444% id. in 225 aa overlap).
   
    0.538
hybA
Hydrogenase-2 operon protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hydrogenase-2 operon protein hyba precursor HybA or b2996 or z4350 or ecs3881 or sf3043 SWALL:HYBA_ECOLI (SWALL:P37179) (328 aa) fasta scores: E(): 4.3e-93, 70.23% id in 336 aa.
   
    0.538
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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