STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0560Putative plasmid transfer protein; Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa. (698 aa)    
Predicted Functional Partners:
ECA0556
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4559 sty4559 or t4257 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 3.2e-31, 50.28% id in 173 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:Q8GQ43 (EMBL:AF440523) (196 aa) fasta scores: E(): 1.9e-21, 41.56% id in 166 aa.
 
   
 0.952
ECA0555
Similar to Salmonella typhi putative exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa.
 
     0.951
ECA0557
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.
 
     0.951
ECA0561
Putative membrane protein; Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi putative membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa.
 
     0.951
ECA0522
Conserved hypothetical protein; Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 3.1e-19, 37.27% id in 169 aa, and to Salmonella typhi hypothetical protein sty4526 SWALL:Q8Z1L8 (EMBL:AL627282) (185 aa) fasta scores: E(): 1.3e-32, 51.14% id in 174 aa.
  
   
 0.880
ECA0573
Putative plasmid-related protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa.
 
  
 0.814
ECA0613
Similar to Salmonella typhi hypothetical protein sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 3.7e-24, 32.5% id in 523 aa, and to Pseudomonas syringae hypothetical 70.0 kDa protein SWALL:Q8RL93 (EMBL:AY083467) (638 aa) fasta scores: E(): 1.4e-12, 25.24% id in 622 aa.
 
     0.795
ECA0568
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62145 (EMBL:AF440523) (230 aa) fasta scores: E(): 1.5e-46, 53.42% id in 219 aa, and to Salmonella typhi possible exported protein sty4568 or t4265 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.1e-66, 72.22% id in 216 aa, and to Pseudomonas putida hypothetical 29.5 kDa protein SWALL:Q8VMJ0 (EMBL:AJ344068) (267 aa) fasta scores: E(): 6.9e-46, 53.67% id in 218 aa.
 
     0.794
ECA0569
Putative exported protein; Similar to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 2.7e-39, 51.31% id in 267 aa, and to Salmonella typhi hypothetical protein sty4569 or t4266 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 3.2e-55, 57.19% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62144 (EMBL:AF440523) (303 aa) fasta scores: E(): 4e-41, 45.24% id in 305 aa.
 
     0.794
ECA0570
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi putative exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa.
 
     0.794
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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