STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0573Putative plasmid-related protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa. (953 aa)    
Predicted Functional Partners:
ECA0572
Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62280 (EMBL:AF440524) (139 aa) fasta scores: E(): 2e-22, 52.3% id in 130 aa, and to Salmonella typhi putative lipoprotein sty4571 or t4267 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.2e-28, 61.48% id in 135 aa.
 
     0.955
ECA0567
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPU0 (EMBL:AF440524) (131 aa) fasta scores: E(): 1.1e-07, 37.39% id in 123 aa, and to Xanthomonas axonopodis hypothetical protein Xac2271 SWALL:Q8PKA4 (EMBL:AE011864) (137 aa) fasta scores: E(): 4.4e-08, 37.3% id in 126 aa.
 
     0.906
ECA0568
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62145 (EMBL:AF440523) (230 aa) fasta scores: E(): 1.5e-46, 53.42% id in 219 aa, and to Salmonella typhi possible exported protein sty4568 or t4265 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.1e-66, 72.22% id in 216 aa, and to Pseudomonas putida hypothetical 29.5 kDa protein SWALL:Q8VMJ0 (EMBL:AJ344068) (267 aa) fasta scores: E(): 6.9e-46, 53.67% id in 218 aa.
 
     0.906
ECA0569
Putative exported protein; Similar to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 2.7e-39, 51.31% id in 267 aa, and to Salmonella typhi hypothetical protein sty4569 or t4266 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 3.2e-55, 57.19% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62144 (EMBL:AF440523) (303 aa) fasta scores: E(): 4e-41, 45.24% id in 305 aa.
 
     0.906
ECA0570
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi putative exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa.
 
     0.906
ECA0566
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT9 (EMBL:AF440524) (120 aa) fasta scores: E(): 5e-10, 41.59% id in 113 aa, and to Pseudomonas putida hypothetical 12.9 kDa protein SWALL:Q8VMI9 (EMBL:AJ344068) (122 aa) fasta scores: E(): 1.2e-09, 46.8% id in 94 aa.
 
     0.905
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
 
 0.893
virB8
Putative conjugal transfer protein; Similar to Escherichia coli VirB8 protein VirB8 SWALL:Q91UW9 (EMBL:AJ297913) (236 aa) fasta scores: E(): 2.8e-14, 29.46% id in 224 aa.
 
 
 0.876
virB6
Putative conjugal transfer protein; Similar to Escherichia coli VirB6 protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 9e-06, 21.12% id in 355 aa.
  
 
 0.839
ECA0578
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa.
 
 
   0.824
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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