STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0576Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62274 (EMBL:AF440524) (145 aa) fasta scores: E(): 9e-09, 39.65% id in 116 aa, and to Salmonella typhi hypothetical protein sty4575 sty4575 or t4272 SWALL:Q8Z1J0 (EMBL:AL627282) (130 aa) fasta scores: E(): 2.6e-19, 46.82% id in 126 aa. (134 aa)    
Predicted Functional Partners:
ECA0577
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62273 (EMBL:AF440524) (311 aa) fasta scores: E(): 7.4e-40, 49.22% id in 323 aa, and to Salmonella typhi hypothetical protein sty4576 sty4576 or t4273 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 3e-85, 66.77% id in 319 aa.
       0.801
ECA0578
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa.
       0.791
ECA0580
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62133 (EMBL:AF440523) (515 aa) fasta scores: E(): 9.4e-85, 42.08% id in 518 aa, and to Salmonella typhi putative membrane protein sty4579 or t4276 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 7.8e-140, 63.54% id in 502 aa.
       0.791
ECA0579
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62271 (EMBL:AF440524) (109 aa) fasta scores: E(): 0.15, 28.18% id in 110 aa, and to Salmonella typhi putative membrane protein sty4578 or t4275 SWALL:Q8Z1I7 (EMBL:AL627282) (110 aa) fasta scores: E(): 3.9e-11, 38.94% id in 95 aa.
       0.767
ECA0575
Putative membrane protein; Similar to Saccharomyces cerevisiae hypothetical 15.9 kDa protein ydr100W SWALL:Q03860 (EMBL:Z47746) (143 aa) fasta scores: E(): 0.59, 33.91% id in 115 aa.
       0.528
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.