STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0587Conserved hypothetical protein; Similar to Yersinia pestis putative DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium putative integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa. (296 aa)    
Predicted Functional Partners:
ECA0614
Putative phage integrase; Similar to Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 7.2e-36, 36.52% id in 334 aa, and to Salmonella typhi probable phage integrase sty4666 or t4357 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 2.2e-62, 48.37% id in 339 aa; Belongs to the 'phage' integrase family.
 
   
 0.791
ECA3675
Putative membrane protein; Similar to Yersinia pestis hypothetical protein ypo2788 or y1139 SWALL:Q8ZD09 (EMBL:AJ414153) (193 aa) fasta scores: E(): 5.5e-56, 73.95% id in 192 aa.
  
     0.762
ECA0566
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT9 (EMBL:AF440524) (120 aa) fasta scores: E(): 5e-10, 41.59% id in 113 aa, and to Pseudomonas putida hypothetical 12.9 kDa protein SWALL:Q8VMI9 (EMBL:AJ344068) (122 aa) fasta scores: E(): 1.2e-09, 46.8% id in 94 aa.
  
     0.747
ECA0567
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPU0 (EMBL:AF440524) (131 aa) fasta scores: E(): 1.1e-07, 37.39% id in 123 aa, and to Xanthomonas axonopodis hypothetical protein Xac2271 SWALL:Q8PKA4 (EMBL:AE011864) (137 aa) fasta scores: E(): 4.4e-08, 37.3% id in 126 aa.
  
     0.741
ECA0573
Putative plasmid-related protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa.
 
     0.735
ECA2852
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 32.7 kDa protein SWALL:Q9AL39 (EMBL:AF200692) (280 aa) fasta scores: E(): 5.7e-66, 59.55% id in 272 aa, and to Escherichia coli Z1226 protein z1226 SWALL:CAD33792 (EMBL:AJ488511) (281 aa) fasta scores: E(): 8.4e-69, 62.59% id in 270 aa.
  
     0.731
ECA0580
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62133 (EMBL:AF440523) (515 aa) fasta scores: E(): 9.4e-85, 42.08% id in 518 aa, and to Salmonella typhi putative membrane protein sty4579 or t4276 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 7.8e-140, 63.54% id in 502 aa.
  
     0.726
ECA0578
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa.
  
   
 0.717
ECA0572
Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62280 (EMBL:AF440524) (139 aa) fasta scores: E(): 2e-22, 52.3% id in 130 aa, and to Salmonella typhi putative lipoprotein sty4571 or t4267 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.2e-28, 61.48% id in 135 aa.
  
     0.715
ECA0570
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi putative exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa.
  
     0.709
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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