STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0595Similar to Salmonella typhi hypothetical protein sty4590 SWALL:Q8Z1H6 (EMBL:AL627282) (98 aa) fasta scores: E(): 1.4e-11, 46.31% id in 95 aa. No other significant database matches. (90 aa)    
Predicted Functional Partners:
ECA0594
Similar to Salmonella typhi hypothetical protein sty4589 SWALL:Q8Z1H7 (EMBL:AL627282) (194 aa) fasta scores: E(): 1.3e-17, 35.02% id in 197 aa. No other significant database matches.
       0.773
ECA0596
Similar to Salmonella typhi hypothetical protein sty4591 SWALL:Q8Z1H5 (EMBL:AL627282) (152 aa) fasta scores: E(): 2.2e-30, 55.84% id in 154 aa. No other significant database matches.
       0.570
ECA0593
Similar to Vibrio cholerae DNA repair protein RadC homolog SWALL:RADC_VIBCH (SWALL:Q9KVC9) (224 aa) fasta scores: E(): 2.2e-28, 55.47% id in 137 aa, and to Escherichia coli DNA repair protein RadC SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 2.4e-26, 50.38% id in 129 aa; Belongs to the UPF0758 family.
       0.457
ECA0597
Similar to Salmonella typhi hypothetical protein sty4592 SWALL:Q8Z1H4 (EMBL:AL627282) (649 aa) fasta scores: E(): 1.3e-115, 48.69% id in 651 aa.
       0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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