STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfa8APutative oxidoreductase; Similar to the N-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 8.2e-20, 45.11% id in 133 aa. (143 aa)    
Predicted Functional Partners:
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.835
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
  
 0.749
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
  
 
 0.735
cfa2
Similar to Pseudomonas syringae coronafacic acid dehydratase Cfa2 SWALL:CFA2_PSESG (SWALL:P72238) (165 aa) fasta scores: E(): 3.3e-49, 76.97% id in 165 aa.
     
 0.704
cfl
Coronafacate ligase; Similar to Pseudomonas syringae coronafacate ligase Cfl SWALL:Q52375 (EMBL:U09027) (509 aa) fasta scores: E(): 1.4e-71, 37.3% id in 512 aa.
     
 0.676
cfa3
Cfa-beta-ketoacylsynthase; Similar to Pseudomonas syringae cfa-beta-ketoacylsynthase Cfa3 SWALL:P72239 (EMBL:U56980) (379 aa) fasta scores: E(): 2.7e-75, 56.15% id in 374 aa, and to Streptomyces coelicolor putative 3-oxoacyl-(acyl-carrier-protein) synthase Sco0548 or scf11.28C SWALL:Q9RK62 (EMBL:AL939105) (428 aa) fasta scores: E(): 3.6e-25, 34.45% id in 415 aa; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  
 0.611
cfa1
Similar to Pseudomonas syringae cfa-acyl carrier protein Cfa1 SWALL:P72237 (EMBL:U56980) (83 aa) fasta scores: E(): 6.8e-17, 60% id in 80 aa.
  
 
 0.594
cfa5
Similar to Pseudomonas syringae coronafacic acid synthetase, ligase component cfa5 or pspto4685 SWALL:Q87W71 (EMBL:AE016872) (472 aa) fasta scores: E(): 4.8e-77, 48.72% id in 472 aa.
     
 0.589
cfa4
Similar to Pseudomonas syringae coronafacic acid synthetase component cfa4 or pspto4684 SWALL:Q87W72 (EMBL:AE016872) (177 aa) fasta scores: E(): 4e-25, 46.38% id in 166 aa.
       0.572
cfa8B
Putative oxidoreductase; Similar to the C-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 6.5e-122, 74.05% id in 397 aa, and to Streptomyces lavendulae hypothetical 45.2 kDa protein SWALL:Q9X5P6 (EMBL:AF127374) (414 aa) fasta scores: E(): 2.2e-82, 52.39% id in 397 aa.
   
   0.568
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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