Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cfa6Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa. (2713 aa)    
Predicted Functional Partners:
entD
Enterobactin synthetase component D (4'-phosphopantetheinyl transferase); Similar to Escherichia coli 4'-phosphopantetheinyl transferase EntD or b0583 SWALL:ENTD_ECOLI (SWALL:P19925) (209 aa) fasta scores: E(): 4.1e-09, 31.49% id in 181 aa, and to Photorhabdus luminescens NgrA SWALL:Q9AI14 (EMBL:AF288077) (248 aa) fasta scores: E(): 2.9e-24, 34.32% id in 236 aa.
 
 0.999
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
 
0.999
cfa5
Similar to Pseudomonas syringae coronafacic acid synthetase, ligase component cfa5 or pspto4685 SWALL:Q87W71 (EMBL:AE016872) (472 aa) fasta scores: E(): 4.8e-77, 48.72% id in 472 aa.
 
 0.999
cfl
Coronafacate ligase; Similar to Pseudomonas syringae coronafacate ligase Cfl SWALL:Q52375 (EMBL:U09027) (509 aa) fasta scores: E(): 1.4e-71, 37.3% id in 512 aa.
 
 0.999
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
 0.999
menE
Similar to Escherichia coli O-succinylbenzoic acid--CoA ligase MenE or b2260 SWALL:MENE_ECOLI (SWALL:P37353) (451 aa) fasta scores: E(): 1.5e-76, 53.43% id in 466 aa.
  
 0.999
ECA1487
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa.
 
 0.999
ECA1488
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa.
 
 0.999
fadD
long-chain-fatty-acid--CoA ligase; Similar to Escherichia coli, and Escherichia coli O6 long-chain-fatty-acid--CoA ligase FadD or oldd or b1805 or c2209 SWALL:LCFA_ECOLI (SWALL:P29212) (561 aa) fasta scores: E(): 6.9e-174, 76.29% id in 561 aa.
 
 0.999
aas
Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase; Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1.
  
 0.999
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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