STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0616Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein 6 pa2916 SWALL:Q9HZT1 (EMBL:AE004718) (197 aa) fasta scores: E(): 1.2e-35, 47.93% id in 194 aa, and to Pseudomonas putida membrane protein, putative pp2429 SWALL:AAN68041 (EMBL:AE016783) (194 aa) fasta scores: E(): 1.9e-31, 44.61% id in 195 aa. (196 aa)    
Predicted Functional Partners:
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
 
     0.824
ECA2788
LysE-family translocator; Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 2.5e-13, 32.05% id in 209 aa, and to Pseudomonas putida transporter, LysE family pp3021 SWALL:AAN68629 (EMBL:AE016785) (204 aa) fasta scores: E(): 8.9e-26, 42.71% id in 199 aa.
  
     0.567
rhtB
Homoserine/homoserine lactone efflux protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 1.1e-63, 77.18% id in 206 aa. Also similar to ECA0827 (RhtB) (36.019% id. in 211 aa overlap).
  
     0.447
ECA0827
Putative amino acid efflux protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 3.9e-19, 34.45% id in 209 aa, and to Shewanella oneidensis transporter, LysE family so0122 SWALL:AAN53209 (EMBL:AE015463) (207 aa) fasta scores: E(): 1.9e-30, 47.8% id in 205 aa. Also similar to ECA4170 (RhtB) (36.019% id. in 211 aa overlap).
  
     0.445
rhtC
Threonine efflux protein; Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 3.3e-62, 73.43% id in 207 aa.
  
     0.425
ECA0067
Similar to Caulobacter crescentus efflux protein, LysE family cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) fasta scores: E(): 1.4e-42, 56.25% id in 208 aa.
  
     0.420
ECA3951
LysE-type translocator; Similar to Pseudomonas putida transporter, LysE family pp0699 SWALL:AAN66324 (EMBL:AE016776) (204 aa) fasta scores: E(): 5.4e-51, 66.01% id in 203 aa, and to Rhizobium meliloti putative amino acid efflux transmembrane protein r03051 or smc02484 SWALL:Q92LJ7 (EMBL:AL591792) (214 aa) fasta scores: E(): 1.5e-25, 39.8% id in 206 aa.
  
     0.405
ECA2050
Putative membrane protein; Similar to Vibrio vulnificus putative threonine efflux protein vv12697 SWALL:AAO11043 (EMBL:AE016806) (211 aa) fasta scores: E(): 2.3e-12, 30.73% id in 205 aa, and to Vibrio cholerae hypothetical protein Vc1421 SWALL:Q9KS40 (EMBL:AE004221) (212 aa) fasta scores: E(): 1.3e-09, 25.51% id in 196 aa.
  
     0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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