STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0631Conserved hypothetical protein; Similar to Escherichia coli O6 protein YjbJ SWALL:AAN83442 (EMBL:AE016770) (71 aa) fasta scores: E(): 1e-20, 76.05% id in 71 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein YjbJ SWALL:Q8XEL4 (EMBL:AE008898) (70 aa) fasta scores: E(): 5.4e-20, 77.14% id in 70 aa; Belongs to the UPF0337 (CsbD) family. (73 aa)    
Predicted Functional Partners:
ECA0470
Putative membrane protein; Similar to Escherichia coli O157:H7 hypothetical protein Z5978 SWALL:Q8X479 (EMBL:AE005669) (59 aa) fasta scores: E(): 3.4e-16, 98.11% id in 53 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm4562 or sty4912 SWALL:Q8XEW6 (EMBL:AE008914) (59 aa) fasta scores: E(): 4e-16, 96.22% id in 53 aa.
 
  
 0.896
ECA0982
Putative lipoprotein; Similar to Salmonella typhimurium putative Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa.
   
    0.798
osmY
Osmotically inducible protein Y; Similar to Escherichia coli, and Escherichia coli O6 osmotically inducible protein Y precursor OsmY or b4376 or c5457 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 6.7e-31, 56.93% id in 202 aa.
 
  
 0.731
ECA0319
Similar to Yersinia pestis putative exported protein ypo3551 SWALL:Q8ZB73 (EMBL:AJ414157) (191 aa) fasta scores: E(): 2.2e-47, 73.82% id in 191 aa, and to Escherichia coli lipoprotein EcfH SWALL:AAL01382 (EMBL:AF407015) (191 aa) fasta scores: E(): 5.6e-46, 71.72% id in 191 aa.
  
  
 0.576
ECA1013
Putative lipoprotein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein ygdi precursor ygdi or b2809 or c3380 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 1.6e-14, 61.11% id in 72 aa, and to Shigella flexneri orf, conserved hypothetical protein ygdi or sf2823 SWALL:AAN44310 (EMBL:AE015296) (76 aa) fasta scores: E(): 4.2e-14, 59.72% id in 72 aa.
   
    0.560
osmC
Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa.
 
  
 0.543
ECA0471
Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.
  
     0.511
ECA2358
Putative aldolase; Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa.
   
    0.493
wecH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
   
    0.485
ECA2044
Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeaq or b1795 or c2200 or z2837 or ecs2504 SWALL:YEAQ_ECOLI (SWALL:P76246) (82 aa) fasta scores: E(): 5.4e-25, 85.18% id in 81 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein SWALL:AAO68813 (EMBL:AE016838) (82 aa) fasta scores: E(): 9.8e-25, 83.95% id in 81 aa.
  
  
 0.444
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.