STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0656Conserved hypothetical protein; Similar to Yersinia pestis hypothetical y1229 SWALL:AAM84804 (EMBL:AE013726) (134 aa) fasta scores: E(): 6.4e-07, 36.55% id in 93 aa. (98 aa)    
Predicted Functional Partners:
fadF
Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 1e-145, 69.35% id in 682 aa, and to Pseudomonas putida 2,4-dienoyl-coA reductase FadH SWALL:AAN67622 (EMBL:AE016781) (693 aa) fasta scores: E(): 8.6e-160, 64.12% id in 683 aa.
       0.483
ECA0658
Putative exported protein; Similar to Salmonella typhimurium periplasmic protein related to spheroblast formation Spy or stm1308 SWALL:Q8ZPU7 (EMBL:AE008757) (161 aa) fasta scores: E(): 1.4e-27, 58.78% id in 165 aa, and to Salmonella typhi putative exported protein sty1805 SWALL:Q8Z6G4 (EMBL:AL627271) (161 aa) fasta scores: E(): 2.6e-27, 58.18% id in 165 aa, and to Escherichia coli spheroplast protein Y precursor Spy SWALL:SPY_ECOLI (SWALL:P77754) (161 aa) fasta scores: E(): 1.6e-25, 55.15% id in 165 aa.
       0.416
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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