Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA0666Hypothetical protein; No significant database matches. (268 aa)    
Predicted Functional Partners:
ECA0665
Putative phage integrase; Similar to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 2.4e-13, 31.42% id in 420 aa, and to Escherichia coli InT protein SWALL:Q93K89 (EMBL:X16664) (386 aa) fasta scores: E(): 1.1e-05, 26.36% id in 239 aa, and to Bacteriophage D3 integrase orf35 SWALL:Q9T1P3 (EMBL:AF165214) (369 aa) fasta scores: E(): 0.0047, 28.4% id in 176 aa.
       0.773
ECA0667
Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3324 SWALL:BAC15280 (EMBL:AP004604) (64 aa) fasta scores: E(): 8.4, 32.2% id in 59 aa, and to Vibrio vulnificus hypothetical protein vv12463 SWALL:AAO10827 (EMBL:AE016805) (78 aa) fasta scores: E(): 9.9, 33.89% id in 59 aa.
       0.474
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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