STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0670Hypothetical protein; No significant database matches. (101 aa)    
Predicted Functional Partners:
ECA0668
Hypothetical protein; No significant database matches.
       0.773
ECA0669
Hypothetical protein; Weakly similar to Pseudomonas aeruginosa hypothetical protein Pa0014 SWALL:Q9I7B2 (EMBL:AE004441) (90 aa) fasta scores: E(): 4, 28.78% id in 66 aa.
       0.773
ECA0667
Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3324 SWALL:BAC15280 (EMBL:AP004604) (64 aa) fasta scores: E(): 8.4, 32.2% id in 59 aa, and to Vibrio vulnificus hypothetical protein vv12463 SWALL:AAO10827 (EMBL:AE016805) (78 aa) fasta scores: E(): 9.9, 33.89% id in 59 aa.
       0.580
ECA0671
Similar to bacteriophage P4 derepression protein epsiloN SWALL:VEPS_BPP4 (SWALL:P05463) (95 aa) fasta scores: E(): 3.4e-08, 43.15% id in 95 aa.
       0.566
ECA0672
Putative phage-related protein; Similar to Bacteriophage phi CTX orf37 SWALL:Q9ZXI8 (EMBL:AB008550) (895 aa) fasta scores: E(): 3.8e-96, 42.27% id in 906 aa, and to Ralstonia solanacearum hypothetical phage-related protein rsc1898 or rs03464 SWALL:Q8XY65 (EMBL:AL646067) (902 aa) fasta scores: E(): 4.5e-170, 49.1% id in 894 aa.
       0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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