| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| crp | rpoA | ECA4064 | ECA4006 | Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.855 |
| crp | rpoB | ECA4064 | ECA0223 | Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa. | DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.760 |
| crp | rpoC | ECA4064 | ECA0224 | Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.726 |
| crp | rpoD | ECA4064 | ECA0680 | Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.934 |
| crp | rpoZ | ECA4064 | ECA0039 | Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.699 |
| dksA | rpoA | ECA3317 | ECA4006 | Dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.624 |
| dksA | rpoB | ECA3317 | ECA0223 | Dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.781 |
| dksA | rpoC | ECA3317 | ECA0224 | Dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.751 |
| dksA | rpoD | ECA3317 | ECA0680 | Dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.821 |
| dksA | rpoZ | ECA3317 | ECA0039 | Dnak suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.882 |
| gyrB | rpoA | ECA4438 | ECA4006 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.568 |
| gyrB | rpoB | ECA4438 | ECA0223 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.892 |
| gyrB | rpoC | ECA4438 | ECA0224 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.846 |
| gyrB | rpoD | ECA4438 | ECA0680 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.821 |
| gyrB | secY | ECA4438 | ECA4011 | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Preprotein translocase subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.722 |
| nusA | rpoA | ECA0711 | ECA4006 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.993 |
| nusA | rpoB | ECA0711 | ECA0223 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.991 |
| nusA | rpoC | ECA0711 | ECA0224 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.977 |
| nusA | rpoD | ECA0711 | ECA0680 | N utilization substance protein A; Participates in both transcription termination and antitermination. | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.903 |
| nusA | rpoZ | ECA0711 | ECA0039 | N utilization substance protein A; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.868 |