Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA0687Putative DNA-binding protein; Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:AAM84258 (EMBL:AJ414157) (133 aa) fasta scores: E(): 1.9e-17, 47.32% id in 112 aa and to bacteriophage D3112 transposase A SWALL:Q38013 (EMBL:X87627) (690 aa) fasta scores: E(): 0.00026, 33.69% id in 92 aa. (128 aa)    
Predicted Functional Partners:
sfsB
Sugar fermentation stimulation protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.7e-20, 70.88% id in 79 aa. Also similar to ECA0513 (71.233% id. in 73 aa overlap), and to ECA0966 (72.368% id. in 76 aa overlap), and to ECA3206 (76.119% id. in 67 aa overlap.).
 
     0.764
priC
Similar to Escherichia coli primosomal replication protein N'' PriC or b0467 SWALL:PRIC_ECOLI (SWALL:P23862) (174 aa) fasta scores: E(): 1.2e-14, 40.11% id in 172 aa.
  
     0.751
ECA3808
Similar to Yersinia pestis hypothetical protein ypo0562 or y3619 SWALL:Q8ZIE2 (EMBL:AJ414143) (176 aa) fasta scores: E(): 4.8e-42, 67.81% id in 174 aa, and to Vibrio cholerae hypothetical protein Vc2395 SWALL:Q9KPH3 (EMBL:AE004310) (157 aa) fasta scores: E(): 3.3e-11, 33.74% id in 163 aa.
  
     0.735
ECA3978
Similar to Yersinia pestis putative lipoprotein ypo0352 SWALL:Q8ZIY2 (EMBL:AJ414142) (128 aa) fasta scores: E(): 4.4e-29, 71.93% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yjei precursor yjei or b4144 or c5228 or sf4298 SWALL:YJEI_ECOLI (SWALL:P39278) (117 aa) fasta scores: E(): 9.7e-24, 60.34% id in 116 aa.
  
     0.715
ECA3222
Conserved hypothetical protein; Similar to Pseudomonas aeruginosa PilF protein SWALL:Q51526 (EMBL:L49434) (198 aa) fasta scores: E(): 4.5e-07, 28.4% id in 169 aa, and to Yersinia pestis putative fimbrial biogenesis protein ypo2881 or y1351 SWALL:Q8ZCT4 (EMBL:AJ414154) (249 aa) fasta scores: E(): 4.2e-62, 71.91% id in 235 aa.
  
     0.664
ECA0969
Similar to Yersinia pestis putative tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa.
  
     0.660
ECA2203
Similar to Yersinia pestis putative exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa.
  
     0.633
ECA0299
Conserved hypothetical protein; Similar to Yersinia pestis putative anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa.
  
     0.580
ECA0045
Putative virulence-associated outer membrane protein; Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL:PAGC_SALTY (SWALL:P23988) (185 aa) fasta scores: E(): 3.5e-26, 45.05% id in 182 aa.
  
    0.567
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.557
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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