STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0688Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:Q8ZBA4 (EMBL:AJ414157) (133 aa) fasta scores: E(): 9.5e-19, 45.83% id in 120 aa, and to Bacteriophage D108 repressor protein CI SWALL:RPC1_BPD10 (SWALL:P07040) (174 aa) fasta scores: E(): 0.00012, 42.37% id in 59 aa. (138 aa)    
Predicted Functional Partners:
ECA2744
Putative helicase; Similar to Yersinia pestis putative dead box helicase family protein ypo1265 or y2919 SWALL:AAM86469 (EMBL:AJ414147) (585 aa) fasta scores: E(): 6.6e-185, 80.3% id in 584 aa, and to Salmonella typhimurium, and Salmonella typhi putative ATP-dependent helicase yejh or stm2223 or sty2460 SWALL:Q8XGB8 (EMBL:AE008799) (586 aa) fasta scores: E(): 2.5e-180, 77.81% id in 586 aa.
  
    0.565
hsdR
Similar to Escherichia coli type I restriction enzyme EcoEI R protein HsdR or Hsr SWALL:T1RE_ECOLI (SWALL:Q47281) (813 aa) fasta scores: E(): 0, 94.71% id in 813 aa, and to Pseudomonas putida type I restriction-modification system, R subunit hsdr or pp4740 SWALL:AAN70312 (EMBL:AE016791) (787 aa) fasta scores: E(): 3.5e-149, 61.76% id in 803 aa.
  
    0.565
ECA0687
Putative DNA-binding protein; Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:AAM84258 (EMBL:AJ414157) (133 aa) fasta scores: E(): 1.9e-17, 47.32% id in 112 aa and to bacteriophage D3112 transposase A SWALL:Q38013 (EMBL:X87627) (690 aa) fasta scores: E(): 0.00026, 33.69% id in 92 aa.
      
0.449
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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