STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YhbUPutative protease; Similar to Proteus mirabilis STM-protease A SWALL:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 3.6e-114, 82.03% id in 334 aa, and to Escherichia coli O157:H7 putative collagenase yhbu SWALL:Q8XA91 (EMBL:AE005544) (331 aa) fasta scores: E(): 1.3e-122, 87.61% id in 331 aa. (331 aa)    
Predicted Functional Partners:
ECA0721
Conserved hypothetical protein (pseudogene); HMMPfam hit to PF00296, DE Luciferase-like monooxygenase, score 3.5e-06.
 
 
 0.981
ECA0723
Putative sterol transferase; Similar to Yersinia pestis putative lipid carrier protein ypo3477 SWALL:Q8ZBD9 (EMBL:AJ414157) (173 aa) fasta scores: E(): 3.9e-49, 74.71% id in 174 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YhbT SWALL:YHBT_ECOLI (SWALL:P45474) (174 aa) fasta scores: E(): 6.7e-44, 71.25% id in 160 aa.
 
  
 0.896
hemN
Similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 3.5e-152, 80.96% id in 457 aa; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.443
ECA3009
Similar to Vibrio parahaemolyticus coproporphyrinogen oxidase homolog PhuW SWALL:Q9XCY7 (EMBL:AF119047) (420 aa) fasta scores: E(): 3.6e-47, 37.87% id in 396 aa, and to Yersinia pestis putative coproporphyrinogen III oxidase ypo0286 or y0547 SWALL:Q8ZJ42 (EMBL:AJ414141) (437 aa) fasta scores: E(): 2.2e-122, 69.1% id in 437 aa.
 
    0.404
udk
Uridine kinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri uridine kinase Udk or b2066 or c2593 or z3234 or ecs2873 or sf2130 SWALL:URK_ECOLI (SWALL:P31218) (213 aa) fasta scores: E(): 3e-70, 87.32% id in 213 aa.
  
    0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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