STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fcuAPutative ferric siderophore TonB-dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor FcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.6e-175, 59.78% id in 756 aa, and to Bordetella bronchiseptica putative ferric siderophore receptor BfrB SWALL:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 1.2e-99, 39.86% id in 725 aa. (750 aa)    
Predicted Functional Partners:
ECA0058
Transmembrane sensor; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.1e-33, 36.04% id in 319 aa.
 
  
 0.671
ECA1272
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.637
ECA0814
Putative iron sensor protein; Similar to Escherichia coli protein FecR SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 4.1e-27, 33.01% id in 315 aa, and to Pseudomonas putida PupR protein SWALL:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 3.3e-23, 29.9% id in 321 aa, and to Bordetella avium RhuR SWALL:Q8L1U8 (EMBL:AY095952) (307 aa) fasta scores: E(): 3.3e-17, 27.12% id in 317 aa.
 
  
 0.624
ECA1273
Putative sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 2.9e-18, 30.09% id in 309 aa, and to Pseudomonas aeruginosa probable transmembrane sensor pa0471 SWALL:Q9I647 (EMBL:AE004485) (323 aa) fasta scores: E(): 8.9e-27, 32.58% id in 313 aa.
 
  
 0.619
ECA0059
TonB-like protein; Similar to Yersinia pestis putative membrane protein ypo3918 SWALL:Q8ZA93 (EMBL:AJ414159) (267 aa) fasta scores: E(): 1.7e-17, 34.7% id in 268 aa, and to Shigella flexneri, and Escherichia coli CjrB SWALL:Q933Q6 (EMBL:AF283292) (258 aa) fasta scores: E(): 7.9e-14, 30.59% id in 268 aa, and to Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 1.5e-10, 31.74% id in 252 aa.
 
 
 0.594
fepA
TonB dependent siderophore receptor; Similar to Escherichia coli ferrienterobactin receptor precursor FepA or Fep or FeuB or b0584 SWALL:FEPA_ECOLI (SWALL:P05825) (746 aa) fasta scores: E(): 1.6e-186, 63.68% id in 738 aa, and to Pseudomonas aeruginosa ferric enterobactin receptor precursor pfea or pa2688 SWALL:PFEA_PSEAE (SWALL:Q05098) (746 aa) fasta scores: E(): 1.1e-187, 66.1% id in 717 aa.
 
  
 0.593
ECA2722
Exogenous ferric siderophore TonB-dependent receptor; Similar to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 9.1e-29, 35.05% id in 716 aa, and to Escherichia coli exogenous ferric siderophore receptor R4 SWALL:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 2e-148, 55.45% id in 678 aa, and to Campylobacter coli ferric receptor CfrA cfrA SWALL:O07651 (EMBL:U80812) (696 aa) fasta scores: E(): 2.3e-77, 37.83% id in 703 aa.
 
  
 0.589
ECA0813
RNA polymerase sigma factor; Similar to Bordetella avium RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 5.1e-26, 45% id in 160 aa, and to Escherichia coli probable RNA polymerase sigma factor feci feci or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.1e-22, 43.94% id in 157 aa; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.579
ECA0475
TonB-dependent siderophore receptor protein; Similar to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or b2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 9.5e-57, 36.61% id in 661 aa, and to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 1.1e-48, 29.73% id in 676 aa.
 
  
 0.567
ECA1274
Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1.6e-22, 47.13% id in 157 aa, and to Pseudomonas aeruginosa putative RNA polymerase sigma factor pa2050 SWALL:Q9I265 (EMBL:AE004631) (168 aa) fasta scores: E(): 2.1e-27, 49.35% id in 156 aa; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.566
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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