STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0747Putative short chain dehydrogenase; Similar to Agrobacterium tumefaciens NAD/NADP dependent oxidoreductase atu5391 or agr_pat_564 SWALL:Q8UJT4 (EMBL:AE008960) (286 aa) fasta scores: E(): 4.9e-43, 52.4% id in 250 aa, and to Bradyrhizobium japonicum oxidoreductase bll5108 SWALL:BAC50373 (EMBL:AP005953) (281 aa) fasta scores: E(): 1e-29, 43.21% id in 243 aa. (246 aa)    
Predicted Functional Partners:
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.704
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.704
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.655
ECA1905
Short chain dehydrogenase; Similar to Pseudomonas putida oxidoreductase, short chain dehydrogenase/reductase family pp2989 SWALL:AAN68597 (EMBL:AE016785) (264 aa) fasta scores: E(): 7.5e-67, 74.71% id in 261 aa, and to Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 4.6e-55, 64.86% id in 259 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
   0.647
ECA0746
Similar to Bradyrhizobium japonicum transcriptional regulatory protein bll5370 SWALL:BAC50635 (EMBL:AP005954) (128 aa) fasta scores: E(): 2.4e-12, 48.51% id in 101 aa, and to Anabaena sp. hypothetical proteinalr2106 SWALL:Q8YV75 (EMBL:AP003588) (110 aa) fasta scores: E(): 6e-12, 41.5% id in 106 aa. Note that there are no significant database matches to enterobacterial species.
       0.544
ECA0748
Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species.
       0.487
ECA0749
Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4139 SWALL:BAC49404 (EMBL:AP005950) (289 aa) fasta scores: E(): 2.1e-57, 52.98% id in 268 aa, and to Oceanobacillus iheyensis sugar binding-protein dependent transporter system permease ob3422 SWALL:BAC15378 (EMBL:AP004604) (269 aa) fasta scores: E(): 4.8e-32, 33.58% id in 265 aa.
       0.487
fruK
1-phosphofructokinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 1-phosphofructokinase FruK or Fpk or b2168 or c2703 or z3426 or ecs3060 or sf2253 SWALL:K1PF_ECOLI (SWALL:P23539) (312 aa) fasta scores: E(): 7.8e-108, 90.7% id in 312 aa; Belongs to the carbohydrate kinase PfkB family.
   
  
 0.473
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
 
 0.461
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
 
 
 0.441
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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