STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0748Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species. (290 aa)    
Predicted Functional Partners:
ECA0749
Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4139 SWALL:BAC49404 (EMBL:AP005950) (289 aa) fasta scores: E(): 2.1e-57, 52.98% id in 268 aa, and to Oceanobacillus iheyensis sugar binding-protein dependent transporter system permease ob3422 SWALL:BAC15378 (EMBL:AP004604) (269 aa) fasta scores: E(): 4.8e-32, 33.58% id in 265 aa.
 
 0.998
ECA0751
Probable sugar ABC transporter, ATP-binding protein; Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC or b3450 SWALL:UGPC_ECOLI (SWALL:P10907) (356 aa) fasta scores: E(): 7.9e-56, 47.05% id in 357 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK or stm4230 SWALL:MALK_SALTY (SWALL:P19566) (369 aa) fasta scores: E(): 6.8e-54, 47.58% id in 372 aa; Belongs to the ABC transporter superfamily.
 
 0.996
ECA0752
Probable sugar ABC transporter, periplasmic binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 4e-21, 27.46% id in 386 aa, and to Bradyrhizobium japonicum Bll4138 protein bll4138 SWALL:BAC49403 (EMBL:AP005950) (444 aa) fasta scores: E(): 5.7e-71, 47.5% id in 440 aa.
 
 0.996
ugpC
Sn-glycerol-3-phosphate transport ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.993
ugpE
Sn-glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.993
ECA2429
Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 2.4e-110, 62.67% id in 426 aa.
 
 0.983
ugpB
Glycerol-3-phosphate-binding periplasmic protein; sn-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system UgpACE.
 
 0.983
malG
Similar to Yersinia pestis putative maltodextrin permease protein ypo0854 or MalG or y3239 SWALL:Q8ZHN6 (EMBL:AJ414145) (283 aa) fasta scores: E(): 9.1e-93, 83.98% id in 281 aa, and to Bacillus halodurans maltose/maltodextrin transport system bh2021 SWALL:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 1.9e-77, 69.14% id in 282 aa.
 
 0.970
ugpA
Sn-glycerol-3-phosphate transport system permease protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
  
 
0.956
togN
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa.
 
 0.939
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.