STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafAAlpha-galactosidase; Similar to Escherichia coli alpha-galactosidase RafA SWALL:RAFA_ECOLI (SWALL:P16551) (708 aa) fasta scores: E(): 7.5e-208, 67.66% id in 705 aa. (714 aa)    
Predicted Functional Partners:
lacZ
Beta-galactosidase; Similar to Escherichia coli beta-galactosidase LacZ or b0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 0, 64.84% id in 1024 aa; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.976
pbg
Beta-galactosidase; Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa.
 
  
 0.975
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.944
palI
Sucrose isomerase; Similar to Erwinia rhapontici sucrose isomerase PalI SWALL:Q9AI64 (EMBL:AF279281) (600 aa) fasta scores: E(): 1.7e-171, 70.25% id in 558 aa.
 
 
 0.936
ECA1968
Putative glycosyl hydrolase; Similar to Yersinia pestis putative glucosidase ypo0848 or y3233 SWALL:Q8ZHP2 (EMBL:AJ414145) (792 aa) fasta scores: E(): 0, 76.27% id in 784 aa, and to Bacillus thermoamyloliquefaciens alpha-glucosidase II SWALL:AGL2_BACTQ (SWALL:Q9F234) (787 aa) fasta scores: E(): 1.5e-66, 27.93% id in 784 aa; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.932
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
  0.912
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.686
rafB
Similar to Escherichia coli raffinose permease RafB SWALL:RAFB_ECOLI (SWALL:P16552) (425 aa) fasta scores: E(): 5.6e-112, 68.34% id in 398 aa, and to Enterobacter cloacae melibiose permease MelY SWALL:P96517 (EMBL:AB000622) (425 aa) fasta scores: E(): 3.8e-114, 67.06% id in 419 aa. Also similar to ECA1489 (LacY) (61.500% id. in 400 aa overlap).
 
   
 0.669
rafR
Similar to Escherichia coli raffinose operon repressor RafR SWALL:RAFR_ECOLI (SWALL:P21867) (335 aa) fasta scores: E(): 7.5e-64, 52.87% id in 331 aa.
       0.506
ECA2210
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id).
 
  
 0.447
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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