STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafRSimilar to Escherichia coli raffinose operon repressor RafR SWALL:RAFR_ECOLI (SWALL:P21867) (335 aa) fasta scores: E(): 7.5e-64, 52.87% id in 331 aa. (334 aa)    
Predicted Functional Partners:
gntR-2
Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa.
  
     0.773
ECA0853
LacI-family transcriptional regulator; Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa.
  
     0.771
ECA3827
Fructose repressor (catabolite repressor/activator); Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri fructose repressor SWALL:FRUR_ECOLI (SWALL:P21168) (334 aa) fasta scores: E(): 3.9e-114, 85.88% id in 333 aa.
  
     0.767
ECA2487
LacI-family transcriptional regulator; Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa.
  
     0.754
ECA0756
Similar to Vibrio pelagius hypothetical protein SWALL:AAN86353 (EMBL:AY014401) (195 aa) fasta scores: E(): 6.6e-31, 48.37% id in 184 aa, and to Deinococcus radiodurans hypothetical protein dr0704 SWALL:Q9RWG4 (EMBL:AE001927) (198 aa) fasta scores: E(): 1.2e-20, 38.77% id in 196 aa. Note that there are no significant database matches to enterobacterial species.
       0.610
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 
 0.592
rafA
Alpha-galactosidase; Similar to Escherichia coli alpha-galactosidase RafA SWALL:RAFA_ECOLI (SWALL:P16551) (708 aa) fasta scores: E(): 7.5e-208, 67.66% id in 705 aa.
       0.506
lacI
Similar to Escherichia coli lactose operon repressor LacI or b0345 SWALL:LACI_ECOLI (SWALL:P03023) (360 aa) fasta scores: E(): 1.6e-68, 52.11% id in 355 aa.
  
   
0.460
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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