STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0765Putative exported protein; Similar to Xanthomonas axonopodis hypothetical protein xac2605 SWALL:Q8PJD0 (EMBL:AE011901) (147 aa) fasta scores: E(): 5.7e-05, 40.54% id in 74 aa, and to Caulobacter crescentus hypothetical protein cc2994 SWALL:Q9A449 (EMBL:AE005962) (137 aa) fasta scores: E(): 8.4e-05, 35.08% id in 114 aa. Note that there are no significant database matches to enterobacterial species. (148 aa)    
Predicted Functional Partners:
ECA0766
Putative exported protein; Similar to Xanthomonas campestris hypothetical protein xcc3622 SWALL:Q8P4T4 (EMBL:AE012483) (232 aa) fasta scores: E(): 5.2e-16, 36.15% id in 177 aa, and to Xanthomonas axonopodis hypothetical protein xac0573 SWALL:Q8PPW0 (EMBL:AE011684) (232 aa) fasta scores: E(): 7.7e-15, 35.02% id in 177 aa. Note that the only significant database matches are to Xanthomonas campestris.
       0.444
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.