STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0777Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein a pspa or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 0.00016, 20% id in 225 aa, and to Oceanobacillus iheyensis phage shock protein a ob0940 SWALL:BAC12896 (EMBL:AP004596) (223 aa) fasta scores: E(): 7.9e-11, 26.87% id in 227 aa. (229 aa)    
Predicted Functional Partners:
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
    
 
 0.900
pspC
Phage shock protein C; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phage shock protein C PspC or b1306 or c1777 or z2479 or ecs1883 or sf1311 SWALL:PSPC_ECOLI (SWALL:P23855) (119 aa) fasta scores: E(): 1.5e-25, 63.15% id in 114 aa.
  
 
 0.884
pspB
Phage shock protein B; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 phage shock protein B PspB or b1305 or c1775 or z2480 or ecs1882 SWALL:PSPB_ECOLI (SWALL:P23854) (74 aa) fasta scores: E(): 4.9e-18, 70.83% id in 72 aa.
  
 
 0.836
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
    
 
 0.712
pspF
Similar to Escherichia coli psp operon transcriptional activator pspf or b1303 SWALL:PSPF_ECOLI (SWALL:P37344) (325 aa) fasta scores: E(): 1.8e-95, 76.61% id in 325 aa.
   
 
 0.702
hrpX
Two-component sensor kinase; Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa.
  
 
 0.663
ECA0778
Putative membrane protein; No significant database matches.
       0.561
ECA0531
PS00736 Single-strand binding protein family signature 2.
  
     0.500
ECA0779
Similar to Bacillus subtilis hypothetical protein YybH yybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.6e-22, 53.22% id in 124 aa. Note that there are no significant database matches to enterobacterial species.
       0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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