STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0779Similar to Bacillus subtilis hypothetical protein YybH yybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.6e-22, 53.22% id in 124 aa. Note that there are no significant database matches to enterobacterial species. (130 aa)    
Predicted Functional Partners:
ECA0778
Putative membrane protein; No significant database matches.
       0.613
ECA0777
Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein a pspa or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 0.00016, 20% id in 225 aa, and to Oceanobacillus iheyensis phage shock protein a ob0940 SWALL:BAC12896 (EMBL:AP004596) (223 aa) fasta scores: E(): 7.9e-11, 26.87% id in 227 aa.
       0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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