STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0790Putative lipoprotein; Similar to Agrobacterium tumefaciens components of type IV pilus CtpE SWALL:Q8UIS2 (EMBL:AE008995) (250 aa) fasta scores: E(): 0.0024, 23.63% id in 220 aa, and to Rhizobium meliloti hypothetical protein r00142 r00142 or smc04110 SWALL:Q92KU4 (EMBL:AL591782) (226 aa) fasta scores: E(): 0.81, 21.62% id in 222 aa. (228 aa)    
Predicted Functional Partners:
ECA0789
Putative membrane protein; Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.1e-15, 29.2% id in 404 aa, and to Escherichia coli protein transport protein HofQ precursor SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 2.9e-10, 24.71% id in 433 aa, and to Salmonella typhi type II secretion system protein HofQ SWALL:Q8Z206 (EMBL:AL627281) (412 aa) fasta scores: E(): 7e-10, 27.27% id in 253 aa; Belongs to the bacterial secretin family.
    
 0.893
ECA0792
Putative type IV pilus protein; Similar to Caulobacter crescentus CpaF SWALL:Q9L714 (EMBL:AF229646) (501 aa) fasta scores: E(): 6.1e-65, 45.13% id in 452 aa, and to Bradyrhizobium japonicum component of type iv pilus blr3494 SWALL:BAC48759 (EMBL:AP005947) (458 aa) fasta scores: E(): 1.7e-74, 55.01% id in 429 aa, and to Vibrio vulnificus flp pilus assembly protein vv11755 SWALL:AAO10167 (EMBL:AE016802) (495 aa) fasta scores: E(): 6.7e-66, 44.73% id in 465 aa.
    
 0.843
ECA0791
Conserved hypothetical protein; Similar to Bradyrhizobium japonicum protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa, and to Caulobacter crescentus pilus assembly protein CpaE SWALL:Q9A495 (EMBL:AE005958) (517 aa) fasta scores: E(): 7.2e-16, 27.76% id in 371 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpF SWALL:Q8UIS3 (EMBL:AE008995) (462 aa) fasta scores: E(): 5.2e-13, 29.79% id in 292 aa; Similar to Bradyrhizobium japonicum Blr3493 protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1. [...]
    
  0.801
ECA0793
Putative type IV pilus protein; Similar to Vibrio vulnificus flp pilus assembly protein tadB vv12335 SWALL:AAO10710 (EMBL:AE016804) (294 aa) fasta scores: E(): 7.9e-20, 28.38% id in 310 aa, and to Actinobacillus actinomycetemcomitans TadB SWALL:Q9XC05 (EMBL:AF152598) (295 aa) fasta scores: E(): 7.7e-14, 27.57% id in 243 aa.
    
 0.699
ECA0794
Putative type IV pilus protein; Similar to Vibrio vulnificus flp pilus assembly protein TadC vv12336 SWALL:AAO10711 (EMBL:AE016804) (293 aa) fasta scores: E(): 2.7e-25, 31.34% id in 319 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 2.7e-24, 34.12% id in 296 aa.
    
 0.682
ECA0788
Putative exported protein; Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa.
    
  0.641
ECA0785
Two component system response regulator; Similar to Alcaligenes eutrophus transcriptional activator protein CzcR czcR SWALL:CZCR_ALCEU (SWALL:Q44006) (225 aa) fasta scores: E(): 8.9e-30, 42.15% id in 223 aa, and to Brucella suis DNA-binding response regulator br0612 SWALL:AAN29541 (EMBL:AE014368) (235 aa) fasta scores: E(): 5.5e-33, 43.27% id in 238 aa.
      
 0.530
ECA3435
Similar to Vibrio cholerae sigma-54 dependent transcriptional regulator vca0117 SWALL:Q9KN48 (EMBL:AE004353) (530 aa) fasta scores: E(): 9.9e-52, 40.46% id in 519 aa, and to Escherichia coli hypothetical sigma-54-dependent transcriptional regulator ygev or b2869 SWALL:YGEV_ECOLI (SWALL:Q46802) (592 aa) fasta scores: E(): 1.8e-39, 35.61% id in 438 aa.
      
 0.530
hcp
Prismane protein homolog (hybrid-cluster protein); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
      
 0.522
ECA0795
Putative membrane protein; Similar to Bradyrhizobium japonicum Blr1433 protein blr1433 SWALL:BAC46698 (EMBL:AP005940) (271 aa) fasta scores: E(): 0.00039, 29.04% id in 272 aa, and to Rhizobium loti O-linked glcnac transferase mlr3120 SWALL:Q98GY3 (EMBL:AP003001) (280 aa) fasta scores: E(): 0.00027, 25.61% id in 246 aa.
     
 0.518
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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