STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0795Putative membrane protein; Similar to Bradyrhizobium japonicum Blr1433 protein blr1433 SWALL:BAC46698 (EMBL:AP005940) (271 aa) fasta scores: E(): 0.00039, 29.04% id in 272 aa, and to Rhizobium loti O-linked glcnac transferase mlr3120 SWALL:Q98GY3 (EMBL:AP003001) (280 aa) fasta scores: E(): 0.00027, 25.61% id in 246 aa. (283 aa)    
Predicted Functional Partners:
ECA0798
Putative membrane protein; Similar to Vibrio vulnificus conserved hypothetical protein vv12340 SWALL:AAO10715 (EMBL:AE016804) (465 aa) fasta scores: E(): 0.14, 24.52% id in 424 aa, and to Salmonella typhimurium peptidase b pepb or stm2536 SWALL:PEPB_SALTY (SWALL:Q9RF52) (427 aa) fasta scores: E(): 1.8, 23.39% id in 265 aa.
 
  
 0.873
ECA0791
Conserved hypothetical protein; Similar to Bradyrhizobium japonicum protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa, and to Caulobacter crescentus pilus assembly protein CpaE SWALL:Q9A495 (EMBL:AE005958) (517 aa) fasta scores: E(): 7.2e-16, 27.76% id in 371 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpF SWALL:Q8UIS3 (EMBL:AE008995) (462 aa) fasta scores: E(): 5.2e-13, 29.79% id in 292 aa; Similar to Bradyrhizobium japonicum Blr3493 protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1. [...]
 
  
 0.861
ECA0793
Putative type IV pilus protein; Similar to Vibrio vulnificus flp pilus assembly protein tadB vv12335 SWALL:AAO10710 (EMBL:AE016804) (294 aa) fasta scores: E(): 7.9e-20, 28.38% id in 310 aa, and to Actinobacillus actinomycetemcomitans TadB SWALL:Q9XC05 (EMBL:AF152598) (295 aa) fasta scores: E(): 7.7e-14, 27.57% id in 243 aa.
 
  
 0.859
ECA0794
Putative type IV pilus protein; Similar to Vibrio vulnificus flp pilus assembly protein TadC vv12336 SWALL:AAO10711 (EMBL:AE016804) (293 aa) fasta scores: E(): 2.7e-25, 31.34% id in 319 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 2.7e-24, 34.12% id in 296 aa.
 
  
 0.852
ECA0788
Putative exported protein; Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa.
 
  
 0.835
ECA0789
Putative membrane protein; Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.1e-15, 29.2% id in 404 aa, and to Escherichia coli protein transport protein HofQ precursor SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 2.9e-10, 24.71% id in 433 aa, and to Salmonella typhi type II secretion system protein HofQ SWALL:Q8Z206 (EMBL:AL627281) (412 aa) fasta scores: E(): 7e-10, 27.27% id in 253 aa; Belongs to the bacterial secretin family.
 
  
 0.833
ECA0796
Putative membrane protein; No significant database matches.
  
  
 0.808
ECA0797
Putative membrane protein; No significant database matches.
  
  
 0.807
ECA0787
Putative membrane protein; Similar to Rhizobium loti type IV prepilin peptidase, CpaA mlr5594 SWALL:Q98BF9 (EMBL:AP003007) (175 aa) fasta scores: E(): 3.7e-05, 30.53% id in 167 aa, and to Rhizobium meliloti probable CpaA2 pilus assembly protein SWALL:Q92YL6 (EMBL:AE007272) (170 aa) fasta scores: E(): 6.4e-05, 28.48% id in 172 aa.
 
   
 0.795
ECA0799
Putative outer membrane protein; Similar to Bradyrhizobium japonicum Bll3563 protein bll3563 SWALL:BAC48828 (EMBL:AP005948) (3441 aa) fasta scores: E(): 8.9e-20, 22.46% id in 3387 aa, and to Brucella suis outer membrane autotransporter bra1148 SWALL:AAN34307 (EMBL:AE014607) (3420 aa) fasta scores: E(): 6.1e-08, 22.91% id in 3217 aa.
 
     0.749
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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