STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0800Similar to Chromobacterium violaceum hypothetical protein cv0465 SWALL:Q7P0V0 (EMBL:AE016911) (527 aa) fasta scores: E(): 9.9e-65, 40.31% id in 506 aa. (596 aa)    
Predicted Functional Partners:
ECA0801
Putative exported protein; Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 2.3e-10, 26.29% id in 232 aa, and to Shewanella oneidensis HlyD family secretion protein so3483 SWALL:AAN56476 (EMBL:AE015784) (369 aa) fasta scores: E(): 2.4e-09, 25.49% id in 251 aa. Note that there are no significant database matches to enterobacterial species; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.981
ECA0802
Putative membrane protein; Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 1.9e-05, 24.12% id in 228 aa, and to Vibrio cholerae periplasmic linker protein, putative vc1756 SWALL:Q9KR86 (EMBL:AE004253) (364 aa) fasta scores: E(): 4e-05, 27.53% id in 247 aa.
 
  0.964
ECA0803
Putative membrane protein; No significant database matches.
 
  0.957
ECA0799
Putative outer membrane protein; Similar to Bradyrhizobium japonicum Bll3563 protein bll3563 SWALL:BAC48828 (EMBL:AP005948) (3441 aa) fasta scores: E(): 8.9e-20, 22.46% id in 3387 aa, and to Brucella suis outer membrane autotransporter bra1148 SWALL:AAN34307 (EMBL:AE014607) (3420 aa) fasta scores: E(): 6.1e-08, 22.91% id in 3217 aa.
 
     0.821
ECA0798
Putative membrane protein; Similar to Vibrio vulnificus conserved hypothetical protein vv12340 SWALL:AAO10715 (EMBL:AE016804) (465 aa) fasta scores: E(): 0.14, 24.52% id in 424 aa, and to Salmonella typhimurium peptidase b pepb or stm2536 SWALL:PEPB_SALTY (SWALL:Q9RF52) (427 aa) fasta scores: E(): 1.8, 23.39% id in 265 aa.
 
    0.788
macA
Similar to Escherichia coli macrolide-specific efflux protein MacA precursor MacA or b0878 SWALL:MACA_ECOLI (SWALL:P75830) (371 aa) fasta scores: E(): 8.9e-30, 37.17% id in 390 aa, and to Yersinia pestis putative HlyD family secretion protein ypo2999 or y1481 SWALL:AAM85052 (EMBL:AJ414154) (401 aa) fasta scores: E(): 3.8e-78, 64.69% id in 405 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.639
ECA2930
HlyD-family secretion protein; Similar to Pseudomonas putida RND efflux membrane fusion protein pp3301 SWALL:AAN68908 (EMBL:AE016786) (367 aa) fasta scores: E(): 2.8e-81, 70.1% id in 368 aa, and to Xylella fastidiosa component of multidrug efflux system xf2084 SWALL:Q9PBQ6 (EMBL:AE004023) (368 aa) fasta scores: E(): 3.9e-75, 63.95% id in 369 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.639
mdtA
Similar to Salmonella typhimurium putative HlyD family secretion protein stm2126 SWALL:Q8ZNQ3 (EMBL:AE008794) (413 aa) fasta scores: E(): 1.9e-84, 63.27% id in 403 aa, and to Salmonella typhi putative efflux system protein sty2339 SWALL:Q8Z5F8 (EMBL:AL627273) (413 aa) fasta scores: E(): 2.2e-84, 63.27% id in 403 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.639
emrA
Similar to Erwinia chrysanthemi EmrA protein EmrA SWALL:Q93KB1 (EMBL:AJ410307) (391 aa) fasta scores: E(): 7.9e-104, 72.63% id in 391 aa, and to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 5.7e-94, 68.28% id in 391 aa.
 
  0.567
ECA0788
Putative exported protein; Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa.
 
    0.558
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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