STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0805Similar to Salmonella typhi hypothetical protein sty4288 SWALL:Q8Z220 (EMBL:AL627281) (308 aa) fasta scores: E(): 3.3e-57, 51.82% id in 301 aa, and to Erwinia amylovora hypothetical 37.6 kDa protein SWALL:Q9F805 (EMBL:AF264948) (332 aa) fasta scores: E(): 2.9e-54, 48.67% id in 302 aa, and to Escherichia coli hypothetical protein YfaD SWALL:YFAD_ECOLI (SWALL:P37014) (299 aa) fasta scores: E(): 8.6e-48, 47.82% id in 299 aa. (310 aa)    
Predicted Functional Partners:
ECA2468
Putative exported protein; Similar to Salmonella typhimurium putative outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa.
  
     0.667
ECA4414
Similar to Yersinia pestis putative exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 3.5e-15, 66.27% id in 86 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 8.1e-14, 59.3% id in 86 aa.
  
     0.594
ECA1474
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa.
  
     0.568
ECA3521
Similar to Escherichia coli O6 hypothetical protein yfim or c3111 SWALL:Q8FF03 (EMBL:AE016764) (114 aa) fasta scores: E(): 3.8e-26, 56.36% id in 110 aa, and to Salmonella typhi hypothetical protein yfim or t0257 SWALL:AAO67983 (EMBL:AE016834) (107 aa) fasta scores: E(): 3.3e-25, 60% id in 105 aa.
  
     0.555
ECA1447
Putative exported protein; Similar to Escherichia coli hypothetical protein ymcb precursor ymcb or b0985 SWALL:YMCB_ECOLI (SWALL:P75883) (248 aa) fasta scores: E(): 3.6e-08, 31% id in 258 aa, and to Shigella flexneri orf, conserved hypothetical protein ymcb or sf0987 SWALL:AAN42615 (EMBL:AE015127) (248 aa) fasta scores: E(): 3.6e-08, 32.04% id in 259 aa.
  
     0.491
ECA2852
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 32.7 kDa protein SWALL:Q9AL39 (EMBL:AF200692) (280 aa) fasta scores: E(): 5.7e-66, 59.55% id in 272 aa, and to Escherichia coli Z1226 protein z1226 SWALL:CAD33792 (EMBL:AJ488511) (281 aa) fasta scores: E(): 8.4e-69, 62.59% id in 270 aa.
  
     0.479
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.458
mcK
Putative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.443
holD
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.430
actP
Putative sodium:solute symporter; Transports acetate; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.421
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.