STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hexYAcetyl-coenzyme A synthetase (pseudogene); PS00455 Putative AMP-binding domain signature. (130 aa)    
Predicted Functional Partners:
ECA0810
Hypothetical protein; No significant database matches.
       0.773
hns2
DNA-binding protein Hns; Similar to Erwinia chrysanthemi Hns regulatory protein Hns SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 1.2e-39, 91.11% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein H-NS SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 8.1e-36, 84.32% id in 134 aa. Also similar to ECA2893 (62.406% id in 133 aa overlap) and to ECA1665 (61.654% id in 133 aa overlap).
      
 0.544
cheD
Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.3e-112, 63.81% id in 561 aa.
      
 0.455
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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