STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0815Similar to Pseudomonas putida membrane protein, putative pp4850 SWALL:AAN70419 (EMBL:AE016792) (355 aa) fasta scores: E(): 6.8e-61, 51.66% id in 331 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0411 SWALL:Q8XSQ6 (EMBL:AL646078) (341 aa) fasta scores: E(): 3.4e-43, 42.07% id in 328 aa. (336 aa)    
Predicted Functional Partners:
ECA0816
Putative membrane protein; Similar to Clostridium acetobutylicum predicted membrane protein, hemolysin iii homolog cac0947 SWALL:Q97KH2 (EMBL:AE007610) (211 aa) fasta scores: E(): 0.68, 25.25% id in 194 aa.
       0.474
ECA0813
RNA polymerase sigma factor; Similar to Bordetella avium RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 5.1e-26, 45% id in 160 aa, and to Escherichia coli probable RNA polymerase sigma factor feci feci or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.1e-22, 43.94% id in 157 aa; Belongs to the sigma-70 factor family. ECF subfamily.
       0.453
ECA0814
Putative iron sensor protein; Similar to Escherichia coli protein FecR SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 4.1e-27, 33.01% id in 315 aa, and to Pseudomonas putida PupR protein SWALL:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 3.3e-23, 29.9% id in 321 aa, and to Bordetella avium RhuR SWALL:Q8L1U8 (EMBL:AY095952) (307 aa) fasta scores: E(): 3.3e-17, 27.12% id in 317 aa.
       0.453
ECA1563
Putative lipoprotein; Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa.
  
     0.452
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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