STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
togTSimilar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 5.8e-176, 84.81% id in 507 aa. Also similar to ECA3560 (40.426% id. in 517 aa overlap). (508 aa)    
Predicted Functional Partners:
rhiN
Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 9e-146, 87.07% id in 379 aa, and to Salmonella typhimurium putative cytoplasmic protein stm1911 SWALL:Q8ZNU8 (EMBL:AE008785) (379 aa) fasta scores: E(): 1.5e-128, 75.72% id in 379 aa. Also similar to ECA3749 (43.810% id. in 315 aa overlap).
 
  
 0.627
exuT
Galacturonate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa.
  
   
 0.588
kdgK
2-dehydro-3-deoxygluconokinase; Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SWALL:KDGK_ERWCH (SWALL:P45416) (310 aa) fasta scores: E(): 1.4e-100, 82.25% id in 310 aa.
 
   
 0.539
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
  
   
 0.536
kdgM
Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 7.1e-64, 67.22% id in 238 aa. Also similar to ECA2302 (59.259% id).
      
 0.496
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
  
   
 0.481
kdgF
Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis putative pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa.
     
 0.465
uxaC
Uronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa.
 
   
 0.432
ECA1968
Putative glycosyl hydrolase; Similar to Yersinia pestis putative glucosidase ypo0848 or y3233 SWALL:Q8ZHP2 (EMBL:AJ414145) (792 aa) fasta scores: E(): 0, 76.27% id in 784 aa, and to Bacillus thermoamyloliquefaciens alpha-glucosidase II SWALL:AGL2_BACTQ (SWALL:Q9F234) (787 aa) fasta scores: E(): 1.5e-66, 27.93% id in 784 aa; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.