STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0829Putative membrane protein; No significant database matches. (192 aa)    
Predicted Functional Partners:
ECA0830
Putative exported protein; No significant database matches.
       0.491
ECA0831
Putative transposase (partial); Partial CDS. Similar to the C-terminal region of Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa, and to Insertion sequence IS4 hypothetical 50.4 kDa protein SWALL:AAA61828 (EMBL:M10575) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa.
       0.487
ECA0828
Putative amino acid-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 8.9e-35, 38.22% id in 259 aa, and to Pseudomonas aeruginosa periplasmic histidine-binding protein HisJ or pa2923 SWALL:Q9HZS4 (EMBL:AE004718) (261 aa) fasta scores: E(): 2.8e-35, 40.15% id in 259 aa; Belongs to the bacterial solute-binding protein 3 family.
       0.420
ECA0832
Partial CDS. Similar to Salmonella typhi putative phage capsid protein sty4827 SWALL:Q8Z106 (EMBL:AL627283) (286 aa) fasta scores: E(): 0.0011, 35.41% id in 96 aa. No other significant database matches.
       0.413
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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