STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0831Putative transposase (partial); Partial CDS. Similar to the C-terminal region of Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa, and to Insertion sequence IS4 hypothetical 50.4 kDa protein SWALL:AAA61828 (EMBL:M10575) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa. (98 aa)    
Predicted Functional Partners:
ECA0830
Putative exported protein; No significant database matches.
       0.768
ECA0832
Partial CDS. Similar to Salmonella typhi putative phage capsid protein sty4827 SWALL:Q8Z106 (EMBL:AL627283) (286 aa) fasta scores: E(): 0.0011, 35.41% id in 96 aa. No other significant database matches.
       0.639
ECA0833
Phage regulatory protein; Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 1.9e-08, 48.98% id in 49 aa, and to Erwinia amylovora levansucrase regulator RlsB SWALL:Q8VNT8 (EMBL:AJ344351) (61 aa) fasta scores: E(): 2.2e-13, 64.7% id in 51 aa, and to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 4.7e-08, 53.06% id in 49 aa. Also similar to ECA0414 (41.818% id. in 55 aa overlap), and to ECA3454 (46.000% id. in 50 aa overlap), and to ECA2599 (39.216% id. in [...]
       0.596
ECA0829
Putative membrane protein; No significant database matches.
       0.487
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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