STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0835Similar to Escherichia coli prophage cp4-57 integrase IntA SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 5.3e-93, 57.76% id in 393 aa, and to Yersinia pestis prophage cp4-57 integrase IntA SWALL:AAM86631 (EMBL:AE013909) (410 aa) fasta scores: E(): 5.3e-145, 92.17% id in 396 aa; Belongs to the 'phage' integrase family. (426 aa)    
Predicted Functional Partners:
ECA0407
Putative integrase (partial); Similar to Shigella flexneri integrase intB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 5.6e-17, 81.48% id in 54 aa, and to Escherichia coli integrase inT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.7e-15, 70.9% id in 55 aa.
  
     0.773
ECA0834
Similar to Pseudomonas syringae hypothetical protein pspto4607 SWALL:Q87WE4 (EMBL:AE016872) (819 aa) fasta scores: E(): 1.1e-96, 37.91% id in 807 aa.
       0.686
alpA
Similar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa.
 
     0.582
ECA2754
Putative prophage primase; Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa.
 
     0.561
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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