rnfH protein (Pectobacterium atrosepticum) - STRING interaction network

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rnfH

Conserved hypothetical protein; Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa; Belongs to the UPF0125 (RnfH) family. (93 aa)

Predicted Functional Partners:

ECA0837

0.944

rnfC

0.925

rnfG

0.909

rnfD

0.885

rnfE

0.860

rnfA

0.844

rnfB

0.832

smpB

0.625

ECA3629

0.535

sspB

0.496

Your Current Organism:

Pectobacterium atrosepticum

NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECA0837	rnfH	ECA0837	ECA0838	Similar to Yersinia pestis hypothetical protein ypo1102 SWALL:Q8ZH13 (EMBL:AJ414146) (144 aa) fasta scores: E(): 2.3e-47, 86.01% id in 143 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfjG SWALL:AAN44173 (EMBL:D12501) (158 aa) fasta scores: E(): 3.3e-42, 76.55% id in 145 aa.	Conserved hypothetical protein; Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa; Belongs to the UPF0125 (RnfH) family.	0.944
ECA0837	smpB	ECA0837	ECA0836	Similar to Yersinia pestis hypothetical protein ypo1102 SWALL:Q8ZH13 (EMBL:AJ414146) (144 aa) fasta scores: E(): 2.3e-47, 86.01% id in 143 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfjG SWALL:AAN44173 (EMBL:D12501) (158 aa) fasta scores: E(): 3.3e-42, 76.55% id in 145 aa.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.623
ECA3629	rnfH	ECA3629	ECA0838	Similar to Yersinia pestis putative membrane protein ypo0943 or y3329 SWALL:Q8ZHF6 (EMBL:AJ414145) (184 aa) fasta scores: E(): 5.8e-58, 78.26% id in 184 aa, and to Vibrio cholerae hypothetical protein Vc0459 SWALL:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 2.3e-42, 56.21% id in 185 aa.	Conserved hypothetical protein; Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa; Belongs to the UPF0125 (RnfH) family.	0.535
ECA3629	sspB	ECA3629	ECA0309	Similar to Yersinia pestis putative membrane protein ypo0943 or y3329 SWALL:Q8ZHF6 (EMBL:AJ414145) (184 aa) fasta scores: E(): 5.8e-58, 78.26% id in 184 aa, and to Vibrio cholerae hypothetical protein Vc0459 SWALL:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 2.3e-42, 56.21% id in 185 aa.	Stringent starvation protein B; Similar to Escherichia coli, and Escherichia coli O157:H7 stringent starvation protein B SspB or b3228 or z4586 or ecs4101 SWALL:SSPB_ECOLI (SWALL:P25663) (165 aa) fasta scores: E(): 3e-39, 71.42% id in 168 aa.	0.515
rnfA	rnfB	ECA2276	ECA2277	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.996
rnfA	rnfC	ECA2276	ECA2278	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.996
rnfA	rnfD	ECA2276	ECA2279	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.997
rnfA	rnfE	ECA2276	ECA2281	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.987
rnfA	rnfG	ECA2276	ECA2280	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.995
rnfA	rnfH	ECA2276	ECA0838	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Conserved hypothetical protein; Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa; Belongs to the UPF0125 (RnfH) family.	0.844
rnfB	rnfA	ECA2277	ECA2276	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.996
rnfB	rnfC	ECA2277	ECA2278	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.997
rnfB	rnfD	ECA2277	ECA2279	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.993
rnfB	rnfE	ECA2277	ECA2281	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.993
rnfB	rnfG	ECA2277	ECA2280	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.995
rnfB	rnfH	ECA2277	ECA0838	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Conserved hypothetical protein; Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa; Belongs to the UPF0125 (RnfH) family.	0.832
rnfB	sspB	ECA2277	ECA0309	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Stringent starvation protein B; Similar to Escherichia coli, and Escherichia coli O157:H7 stringent starvation protein B SspB or b3228 or z4586 or ecs4101 SWALL:SSPB_ECOLI (SWALL:P25663) (165 aa) fasta scores: E(): 3e-39, 71.42% id in 168 aa.	0.428
rnfC	rnfA	ECA2278	ECA2276	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.996
rnfC	rnfB	ECA2278	ECA2277	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.997
rnfC	rnfD	ECA2278	ECA2279	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.998

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