STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntHManganese transport protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. (410 aa)    
Predicted Functional Partners:
ECA2142
Urea amidolyase; Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 0, 52.92% id in 1213 aa, and to Pseudomonas fluorescens urea amidolyase homologue uahA SWALL:Q9XAV3 (EMBL:AJ243652) (1213 aa) fasta scores: E(): 0, 51.47% id in 1224 aa.
  
  
 0.733
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
  
 0.507
yfeC
Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa.
   
  
 0.492
yfeD
Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa.
   
  
 0.492
znuB
Similar to Escherichia coli high-affinity zinc uptake system membrane protein ZnuB or b1859 SWALL:ZNUB_ECOLI (SWALL:P39832) (261 aa) fasta scores: E(): 5.3e-80, 83.01% id in 259 aa.
   
  
 0.492
ECA3757
Similar to Escherichia coli putative ABC transporter membrane protein SWALL:CAD33756 (EMBL:AJ488511) (284 aa) fasta scores: E(): 2e-79, 80.35% id in 280 aa, and to Neisseria meningitidis putative ABC-transporter membrane protein nma0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.8e-54, 57.14% id in 280 aa.
   
  
 0.492
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
  
 
 0.474
sufI
Putative cell division protein; Cell division protein that is required for growth during stress conditions. May be involved in protecting or stabilizing the divisomal assembly under conditions of stress.
  
 
 0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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