STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0844Similar to Yersinia pestis putative tautomerase ypo3989 SWALL:Q8ZA31 (EMBL:AJ414160) (66 aa) fasta scores: E(): 2.5e-18, 81.81% id in 66 aa, and to Erwinia chrysanthemi hypothetical 8.1 kDa protein in kdgk 5'region SWALL:YKDK_ERWCH (SWALL:P45418) (73 aa) fasta scores: E(): 3.9e-17, 78.12% id in 64 aa. (67 aa)    
Predicted Functional Partners:
pptA
Similar to Escherichia coli hypothetical protein ydce or b1461 SWALL:YDCE_ECOLI (SWALL:P31992) (77 aa) fasta scores: E(): 6e-11, 46.66% id in 75 aa, and to Xylella fastidiosa hypothetical protein Xf1725 SWALL:Q9PCQ3 (EMBL:AE003996) (82 aa) fasta scores: E(): 0.0047, 35.13% id in 74 aa; Belongs to the 4-oxalocrotonate tautomerase family. PptA subfamily.
     
  0.900
ECA0845
Putative membrane protein; Similar to Xylella fastidiosa hypothetical protein xf0268 SWALL:Q9PGN0 (EMBL:AE003880) (395 aa) fasta scores: E(): 2.5e-82, 61.69% id in 355 aa, and to Salmonella typhi putative membrane protein sty4872 SWALL:Q8Z0X3 (EMBL:AL627284) (394 aa) fasta scores: E(): 3.4e-79, 62.78% id in 352 aa, and to Escherichia coli hypothetical protein YjiJ SWALL:YJIJ_ECOLI (SWALL:P39381) (392 aa) fasta scores: E(): 3.8e-75, 58.23% id in 352 aa.
 
     0.814
aplK
Glycerol kinase; Involved in catabolism of D-apiose. Catalyzes phosphorylation of apulose to form apulose 4-phosphate.
     
 0.556
lerK
Putative dihydroxyacetone kinase; Involved in catabolism of D-apiose. Catalyzes the phosphorylation of L-erythrulose to L-erythrulose 1-phosphate. Can also phosphorylate D-erythrulose and dihydroxyacetone in vitro.
      
 0.542
oiaC
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes decarboxylation of 3-oxo-isoapionate to L-erythrulose.
      
 0.542
apnO
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes the conversion of D-apionate to 3-oxo-isoapionate.
      
 0.542
apsI
Putative xylose isomerase; Involved in catabolism of D-apiose. Catalyzes isomerization of D-apiose to apulose.
      
 0.542
tpiA
Putative triosephosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of L-erythrulose 1-phosphate to D-erythrulose 4- phosphate.
      
 0.477
rpiB
Ribose 5-phosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of D-erythrulose 4-phosphate to D-erythrose 4-phosphate.
      
 0.474
ftsZ
Cell division protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
      
 0.471
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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