STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldAGlycerol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O6 glycerol dehydrogenase GldA or b3945 or c4904 SWALL:GLDA_ECOLI (SWALL:P32665) (367 aa) fasta scores: E(): 1.2e-57, 49.16% id in 358 aa. (365 aa)    
Predicted Functional Partners:
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.949
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
     
 0.948
ECA0350
Similar to Yersinia pestis putative iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa.
     
 0.947
fucO
Lactaldehyde reductase; Similar to Escherichia coli, and Escherichia coli O157:H7 lactaldehyde reductase FucO or b2799 or z4116 or ecs3659 SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.5e-104, 73.69% id in 384 aa.
 
  
 0.921
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
  
 0.473
araB
L-ribulokinase; Similar to Escherichia coli L-ribulokinase AraB or b0063 SWALL:ARAB_ECOLI (SWALL:P08204) (565 aa) fasta scores: E(): 7.7e-174, 71.79% id in 553 aa.
  
  
 0.468
ECA0845
Putative membrane protein; Similar to Xylella fastidiosa hypothetical protein xf0268 SWALL:Q9PGN0 (EMBL:AE003880) (395 aa) fasta scores: E(): 2.5e-82, 61.69% id in 355 aa, and to Salmonella typhi putative membrane protein sty4872 SWALL:Q8Z0X3 (EMBL:AL627284) (394 aa) fasta scores: E(): 3.4e-79, 62.78% id in 352 aa, and to Escherichia coli hypothetical protein YjiJ SWALL:YJIJ_ECOLI (SWALL:P39381) (392 aa) fasta scores: E(): 3.8e-75, 58.23% id in 352 aa.
       0.445
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
   
 
 0.444
ECA0844
Similar to Yersinia pestis putative tautomerase ypo3989 SWALL:Q8ZA31 (EMBL:AJ414160) (66 aa) fasta scores: E(): 2.5e-18, 81.81% id in 66 aa, and to Erwinia chrysanthemi hypothetical 8.1 kDa protein in kdgk 5'region SWALL:YKDK_ERWCH (SWALL:P45418) (73 aa) fasta scores: E(): 3.9e-17, 78.12% id in 64 aa.
       0.435
lerK
Putative dihydroxyacetone kinase; Involved in catabolism of D-apiose. Catalyzes the phosphorylation of L-erythrulose to L-erythrulose 1-phosphate. Can also phosphorylate D-erythrulose and dihydroxyacetone in vitro.
  
 
 0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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