STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0848Putative sugar ABC transporter, periplasmic binding protein; Similar to Agrobacterium radiobacter lactose-binding protein precursor lacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 6e-79, 49.4% id in 417 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter periplasmic solute-binding protein lace or rb0001 or smb21652 SWALL:Q926I0 (EMBL:AL603642) (424 aa) fasta scores: E(): 1.1e-82, 50.97% id in 410 aa. (421 aa)    
Predicted Functional Partners:
ECA0849
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SWALL:LACF_AGRRD (SWALL:P29823) (298 aa) fasta scores: E(): 1.2e-73, 62.54% id in 291 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter permease protein LacF or rb0002 or smb21653 SWALL:Q92XF9 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.1e-74, 65.27% id in 288 aa.
 
 0.994
ECA0850
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacG SWALL:LACG_AGRRD (SWALL:P29824) (273 aa) fasta scores: E(): 6.5e-66, 57.46% id in 268 aa, and to Bacillus subtilis L-arabinose transport system permease protein AraQ SWALL:ARAQ_BACSU (SWALL:P94530) (281 aa) fasta scores: E(): 1e-30, 33.94% id in 271 aa.
 
 0.994
ECA0851
Putative sugar ABC transporter ATP-binding protein; Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SWALL:LACK_AGRRD (SWALL:Q01937) (363 aa) fasta scores: E(): 5.5e-66, 56.16% id in 365 aa, and to Yersinia pestis putative transport ATP-binding protein y3242 SWALL:AAM86792 (EMBL:AE013925) (368 aa) fasta scores: E(): 1.1e-77, 60.94% id in 361 aa; Belongs to the ABC transporter superfamily.
  
 0.975
togM
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa.
 
 0.829
malF
Similar to Escherichia coli maltose transport system permease protein MalF or b4033 SWALL:MALF_ECOLI (SWALL:P02916) (514 aa) fasta scores: E(): 5.9e-36, 39.71% id in 277 aa, and to Yersinia pestis putative maltodextrin transport permease ypo0855 or MalF or y3240 SWALL:Q8ZHN5 (EMBL:AJ414145) (435 aa) fasta scores: E(): 6.8e-138, 81.86% id in 419 aa.
 
 0.798
togN
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa.
 
 0.762
pbg
Beta-galactosidase; Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa.
 
   
 0.762
malK
Similar to Escherichia coli, and Escherichia coli O157:H7 maltose/maltodextrin transport ATP-binding protein MalK or b4035 or z5633 or ecs5018 SWALL:MALK_ECOLI (SWALL:P02914) (371 aa) fasta scores: E(): 1.1e-65, 53.48% id in 359 aa; Belongs to the ABC transporter superfamily.
  
 0.734
ECA3746
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa.
 
 0.722
ECA0748
Putative binding-protein-dependent transport system protein; Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species.
 
 0.706
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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