STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0855Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa. (313 aa)    
Predicted Functional Partners:
ECA0854
ABC transporter, ATP-binding protein; Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa.
  0.995
ECA0856
Similar to Rhizobium sp. TAL1145 mimosine-binding periplasmic protein MidA SWALL:Q9EYT2 (EMBL:AF312768) (281 aa) fasta scores: E(): 1.8e-11, 28.07% id in 260 aa, and to Bifidobacterium longum probable solute binding protein of ABC transporter system bl1179 SWALL:AAN24984 (EMBL:AE014742) (354 aa) fasta scores: E(): 5.8e-23, 33.8% id in 281 aa.
 
  0.953
glnH
Glutamine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 3.8e-79, 87.09% id in 248 aa; Belongs to the bacterial solute-binding protein 3 family.
  0.885
ECA3539
Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa.
  0.858
ECA2970
ABC-transporter ATP-binding protein; Similar to Corynebacterium efficiens putative amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa.
  0.842
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
  0.835
ECA3492
Putative amino acid ABC transporter, ATP-binding protein; Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SWALL:GLNQ_BACST (SWALL:P27675) (242 aa) fasta scores: E(): 3.8e-43, 52.72% id in 239 aa, and to Yersinia pestis putative amino acid ABC transporter, ATP-binding protein ypo3254 or glnq or y0935 SWALL:Q8ZBY0 (EMBL:AJ414156) (248 aa) fasta scores: E(): 5.2e-78, 89.79% id in 245 aa.
  0.831
glnQ
Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ or b0809 SWALL:GLNQ_ECOLI (SWALL:P10346) (240 aa) fasta scores: E(): 6.2e-76, 90% id in 240 aa.
  0.826
ECA4193
Similar to Bacillus subtilis probable amino-acid ABC transporter ATP-binding protein YxeO or lp9G SWALL:YXEO_BACSU (SWALL:P54954) (249 aa) fasta scores: E(): 1.6e-51, 63.2% id in 250 aa, and to Clostridium acetobutylicum ABC-type polar amino acid transport system, ATPase component cac0879 SWALL:Q97KN8 (EMBL:AE007603) (243 aa) fasta scores: E(): 4.7e-45, 57.43% id in 242 aa.
  0.823
ECA2153
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-57, 66.91% id in 266 aa, and to Rhizobium meliloti probable ABC transporter, ATP-binding protein ra1185 or sma2195 SWALL:Q92XQ9 (EMBL:AE007304) (254 aa) fasta scores: E(): 1.2e-48, 60.64% id in 249 aa.
  
  0.812
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.