STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0865Probable transport protein; Similar to Streptomyces coelicolor putative transporter protein sco0581 SWALL:Q9RJQ9 (EMBL:AL939106) (455 aa) fasta scores: E(): 2.9e-116, 68.09% id in 442 aa, and to Yersinia pestis putative integral membrane protein ypo2237 SWALL:Q8ZED7 (EMBL:AJ414151) (436 aa) fasta scores: E(): 3.1e-61, 39.77% id in 435 aa. (460 aa)    
Predicted Functional Partners:
oiaC
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes decarboxylation of 3-oxo-isoapionate to L-erythrulose.
 
    0.898
lerK
Putative dihydroxyacetone kinase; Involved in catabolism of D-apiose. Catalyzes the phosphorylation of L-erythrulose to L-erythrulose 1-phosphate. Can also phosphorylate D-erythrulose and dihydroxyacetone in vitro.
 
     0.850
tpiA
Putative triosephosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of L-erythrulose 1-phosphate to D-erythrulose 4- phosphate.
 
     0.824
apnO
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes the conversion of D-apionate to 3-oxo-isoapionate.
 
     0.821
ECA0864
Hypothetical protein; No significant database matches.
       0.773
narG
Similar to Escherichia coli respiratory nitrate reductase 1 alpha chain NarG or NarC or BisD or b1224 SWALL:NARG_ECOLI (SWALL:P09152) (1246 aa) fasta scores: E(): 0, 83.77% id in 1245 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.623
nasB
Similar to Klebsiella pneumoniae nitrite reductase [NAD(P)H] large subunit NasB SWALL:NIRB_KLEPN (SWALL:Q06458) (957 aa) fasta scores: E(): 0, 70.89% id in 962 aa; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.617
narH
Similar to Escherichia coli respiratory nitrate reductase 1 beta chain NarH or b1225 SWALL:NARH_ECOLI (SWALL:P11349) (512 aa) fasta scores: E(): 6.2e-178, 86.74% id in 513 aa.
  
 
 0.571
ECA1967
Putative hexuronate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 2.6e-53, 42.85% id in 329 aa, and to Yersinia pestis putative sugar transporter ypo0847 or ExuT or y3232 SWALL:AAM86782 (EMBL:AJ414145) (435 aa) fasta scores: E(): 1.2e-142, 77.03% id in 431 aa. Also similar to ECA0644 (44.039% id in 411 aa overlap).
  
  
  0.549
narJ
Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 1 delta chain NarJ or b1226 or z2003 or ecs1731 SWALL:NARJ_ECOLI (SWALL:P11351) (236 aa) fasta scores: E(): 8.1e-56, 62.18% id in 238 aa.
  
  
 0.528
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.