STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oiaCConserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes decarboxylation of 3-oxo-isoapionate to L-erythrulose. (275 aa)    
Predicted Functional Partners:
apnO
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes the conversion of D-apionate to 3-oxo-isoapionate.
 
   
 0.967
lerK
Putative dihydroxyacetone kinase; Involved in catabolism of D-apiose. Catalyzes the phosphorylation of L-erythrulose to L-erythrulose 1-phosphate. Can also phosphorylate D-erythrulose and dihydroxyacetone in vitro.
 
   
 0.959
tpiA
Putative triosephosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of L-erythrulose 1-phosphate to D-erythrulose 4- phosphate.
 
   
 0.950
ECA0865
Probable transport protein; Similar to Streptomyces coelicolor putative transporter protein sco0581 SWALL:Q9RJQ9 (EMBL:AL939106) (455 aa) fasta scores: E(): 2.9e-116, 68.09% id in 442 aa, and to Yersinia pestis putative integral membrane protein ypo2237 SWALL:Q8ZED7 (EMBL:AJ414151) (436 aa) fasta scores: E(): 3.1e-61, 39.77% id in 435 aa.
 
    0.897
rpiB
Ribose 5-phosphate isomerase; Involved in catabolism of D-apiose. Catalyzes the isomerization of D-erythrulose 4-phosphate to D-erythrose 4-phosphate.
 
   
 0.760
ECA0864
Hypothetical protein; No significant database matches.
       0.727
ECA0190
Similar to Bacillus halodurans transcriptional regulator bh3917 SWALL:Q9K616 (EMBL:AP001520) (261 aa) fasta scores: E(): 6.3e-11, 26.81% id in 220 aa, and to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.8e-09, 26.81% id in 220 aa.
 
  
 0.675
ECA1463
Putative carbohydrate kinase; Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis putative carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa.
  
  
 0.651
apsI
Putative xylose isomerase; Involved in catabolism of D-apiose. Catalyzes isomerization of D-apiose to apulose.
  
   
 0.639
ECA1457
Similar to Yersinia pestis putative thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; Belongs to the TPP enzyme family.
  
  
 0.628
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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