STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0882Similar to Yersinia pestis hypothetical protein ypo3025 SWALL:Q8ZCG6 (EMBL:AJ414155) (299 aa) fasta scores: E(): 1.3e-91, 75.25% id in 299 aa, and to Escherichia coli hypothetical protein YfeX SWALL:YFEX_ECOLI (SWALL:P76536) (299 aa) fasta scores: E(): 3.6e-79, 67.33% id in 300 aa. (299 aa)    
Predicted Functional Partners:
hemG
Protoporphyrinogen oxidase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protoporphyrinogen oxidase HemG or b3850 or c4797 or z5372 or ecs4778 SWALL:HEMG_ECOLI (SWALL:P27863) (181 aa) fasta scores: E(): 8.5e-44, 62.14% id in 177 aa.
     
 0.602
ECA1510
Putative iron permease; Similar to Yersinia pestis similarity to some hypothetical proteins in b. subtilis ypo1941 or y2370 SWALL:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 5.2e-172, 74.02% id in 639 aa, and to Pasteurella multocida hypothetical protein Pm0453 pSWALL:Q9CNH8 (EMBL:AE006081) (634 aa) fasta scores: E(): 9.6e-146, 64.36% id in 623 aa.
  
  
 0.598
ECA0881
Similar to Yersinia pestis putative lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi putative lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa.
 
    0.573
hemY
Porphyrin biosynthetic protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri HemY protein HemY or b3802 or c4721 or z5316 or ecs4732 or sf3874 SWALL:HEMY_ECOLI (SWALL:P09128) (398 aa) fasta scores: E(): 1.3e-109, 73.02% id in 393 aa, and to Salmonella typhi porphyrin biosynthetic protein sty3624 SWALL:Q8Z398 (EMBL:AL627279) (399 aa) fasta scores: E(): 7e-108, 71.24% id in 393 aa.
     
 0.513
tyrA
Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA or b2600 SWALL:TYRA_ECOLI (SWALL:P07023) (373 aa) fasta scores: E(): 1.6e-123, 87.13% id in 373 aa.
      
 0.486
rumA
23S rRNA (uracil-5-)-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
 
      0.449
cysP
Similar to Escherichia coli thiosulfate-binding protein precursor CysP or b2425 SWALL:CYSP_ECOLI (SWALL:P16700) (338 aa) fasta scores: E(): 1e-102, 79.34% id in 334 aa.
       0.446
cysW
Similar to Escherichia coli, and Escherichia coli O6 sulfate transport system permease protein CysW SWALL:CYSW_ECOLI (SWALL:P16702) (291 aa) fasta scores: E(): 9.2e-80, 69.49% id in 295 aa.
       0.438
cysT
Sulphate transport system permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.437
pheA
Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri P-protein [includes: chorismate mutase and prephenate dehydratase] PheA or b2599 or z3891 or ecs3462 or sf2659 SWALL:PHEA_ECOLI (SWALL:P07022) (386 aa) fasta scores: E(): 1e-115, 76.17% id in 382 aa.
     
 0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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