STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0890Two-component system sensor kinase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 sensor protein CpxA or EcfB or Ssd or Eup or b3911 or c4863 or z5456 or ecs4837 SWALL:CPXA_ECOLI (SWALL:P08336) (457 aa) fasta scores: E(): 2.2e-23, 29.53% id in 474 aa, and to Yersinia pestis putative two-component system sensor kinase ypo2997 or y1483 SWALL:Q8ZCJ0 (EMBL:AJ414154) (449 aa) fasta scores: E(): 1e-91, 56.86% id in 459 aa. (454 aa)    
Predicted Functional Partners:
ECA0889
Two-component system response regulator; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein CpxR or b3912 or z5457 or ecs4838 or sf3991 SWALL:CPXR_ECOLI (SWALL:P16244) (232 aa) fasta scores: E(): 3.5e-31, 44.93% id in 227 aa, and to Yersinia pestis putative two-component system response regulator ypo2998 or cpxr or y1482 SWALL:Q8ZCI9 (EMBL:AJ414154) (227 aa) fasta scores: E(): 1.3e-67, 77.97% id in 227 aa.
 
 
 0.975
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 
 
0.897
cpxR
Two-component response regulator; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein CpxR or b3912 or z5457 or ecs4838 or sf3991 SWALL:CPXR_ECOLI (SWALL:P16244) (232 aa) fasta scores: E(): 5.3e-78, 88.79% id in 232 aa.
 
 
 0.877
qseB
Two-component system response regulator; Similar to Escherichia coli transcriptional regulatory protein QseB SWALL:QSEB_ECOLI (SWALL:P52076) (219 aa) fasta scores: E(): 3.1e-59, 68.34% id in 218 aa.
 
 
 0.803
ECA0785
Two component system response regulator; Similar to Alcaligenes eutrophus transcriptional activator protein CzcR czcR SWALL:CZCR_ALCEU (SWALL:Q44006) (225 aa) fasta scores: E(): 8.9e-30, 42.15% id in 223 aa, and to Brucella suis DNA-binding response regulator br0612 SWALL:AAN29541 (EMBL:AE014368) (235 aa) fasta scores: E(): 5.5e-33, 43.27% id in 238 aa.
 
 
 0.799
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
  
 
 0.796
pmrA
Two-component response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum response regulator PmrA SWALL:CAE47079 (EMBL:AJ583007) (222 aa) fasta scores: E(): 6.4e-85, 98.19% id in 222 aa, and to Escherichia coli transcriptional regulatory protein BasR or PmrA or b4113 SWALL:BASR_ECOLI (SWALL:P30843) (222 aa) fasta scores: E(): 1.4e-52, 60.63% id in 221 aa.
 
 
 0.791
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
 
 
0.744
baeR
Two-component system response regulator; Similar to Escherichia coli, and Escherichia coli O6 transcriptional regulatory protein BaeR baer or b2079 or c2605 SWALL:BAER_ECOLI (SWALL:P30846) (240 aa) fasta scores: E(): 5.7e-63, 73.12% id in 227 aa.
 
 
 0.723
ompR
Two-component osmolarity response regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri transcriptional regulatory protein OmpR or OmpB or Kmt or b3405 or c4181 or z4760 or ecs4247 or stm3502 or sty4294 or t4004 or sf3424 SWALL:OMPR_ECOLI (SWALL:P03025) (239 aa) fasta scores: E(): 3.6e-91, 99.16% id in 239 aa.
 
 
 0.699
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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