STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crrPTS system, glucose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri PTS system, glucose-specific IIA component Crr or Gsr or Iex or Tgs or Tred or b2417 or c2952 or sf2472 SWALL:PTGA_ECOLI (SWALL:P08837) (168 aa) fasta scores: E(): 5e-53, 95.23% id in 168 aa. (169 aa)    
Predicted Functional Partners:
ptsG
PTS system, glucose-specific IIBC component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific IIBC component PtsG or GlcA or Umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 7.7e-159, 87.42% id in 477 aa.
 0.999
aglA
Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 6.7e-142, 69.04% id in 533 aa.
 0.998
ECA3225
Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIbc component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 2e-59, 37.28% id in 531 aa, and to Bacillus subtilis PTS system, arbutin-like IIbc component GlvC or GlvCB or Glv-2 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 1.9e-58, 35.79% id in 528 aa.
 0.998
ptsH
PTS system phosphocarrier protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa.
 
 0.997
ptsI
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
 
 0.996
treB
Similar to Escherichia coli PTS system, trehalose-specific IIbc component TreB or b4240 SWALL:PTTB_ECOLI (SWALL:P36672) (473 aa) fasta scores: E(): 2.3e-147, 78.72% id in 470 aa.
 0.996
nagE
Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa.
 
 0.993
ascF
Similar to Escherichia coli PTS system enzyme, arbutin-, cellobiose-, and salicin-specific iiabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 4.8e-135, 80.25% id in 471 aa.
 0.993
scrA
Similar to Klebsiella pneumoniae PTS system, sucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 2.1e-142, 80.92% id in 456 aa, and to Erwinia amylovora enzyme II ScrA SWALL:Q9F499 (EMBL:AJ250722) (457 aa) fasta scores: E(): 9e-140, 80.97% id in 452 aa.
 
 0.975
ECA0188
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.9e-43, 32.79% id in 436 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.4e-43, 31.15% id in 459 aa.
 
 0.940
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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