STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0906Similar to Yersinia pestis putative membrane protein ypo2978 SWALL:AAM85075 (EMBL:AJ414154) (175 aa) fasta scores: E(): 3.9e-37, 60.66% id in 150 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm3021 or sty3166 SWALL:Q8XG43 (EMBL:AE008839) (160 aa) fasta scores: E(): 2.2e-33, 60% id in 145 aa. (156 aa)    
Predicted Functional Partners:
ECA0905
Similar to Yersinia pestis putative LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.
 
     0.688
arnE
Putative membrane protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family.
 
    0.498
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (36%) [HD]